Bubalus bubalis (water buffalo): 102390470
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Entry
102390470 CDS
T05912
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102390470 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102390470 (PATL1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102390470 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
102390470 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
102390470
NCBI-ProteinID:
XP_025121780
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All DBs
Position
16:1106233..1133030
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AA seq
789 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAVNEQSGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAVPSFNQQPVQSCSIDFPPPETSSWKGRPMWKILCPKAVHV
RPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGR
MSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPPATPPPPQQHPPG
PGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDH
IRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEMQGDGPK
KERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQV
RDKRRKTLFIIEKTYSLLLDVEDYERRYLLSLEEERPALMDERKHKICCMYDNLRGKLPG
QERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPC
LLSPFSLLLYHLPPVTVTSLLQQLMNLPQSAAAPAPSNPHLSAVLQNKFGLSLLLVVLSR
GEDLQSSDAASESAQSNPWTEVMFVATRELLRIPQTGLAKPISIPTNLVSLFSRYVDRQK
LNLLETKLQ
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggcctgggagaggaggacgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgaactggaggagaagcta
cctgcagcagttaatgaacaaagcggcaatggagaaagggatgagatggacttgttgggt
gaccatgaggagaatctggcagagaggctcagcaagatggtgattgaaaatgaacttgaa
gacccagctatcatgcgggcggtacagaccaggccagtgttgcaaccccaaccaggaagt
ctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccactgctt
gctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccccag
ggcccagaagacgatcgggacctgtccgagcgcgcattaccaaggcggtccacctcgcct
gtcattgggagtcctcctgttagagctgtccccataggcaccccacctaagcagatggct
gtgcccagcttcaaccagcagcctgtgcagtcctgttccatagacttccctccacctgaa
accagcagctggaaaggaaggccaatgtggaagattctgtgtccaaaggctgtccacgtt
cggcccccaatgccgccacggtatcctgctccctatggtgagaggatgtctccaaaccag
ctctgcagtgtcccgaactcctccctgctgggccacccttttccccctagcgtccctcct
gtcctcagccccctccagagagcacagcttcttggaggagcacagctacagcctggacgg
atgtctcccagccagtttgcacgggtgcctggattcgtgggcagcccacttgccgccatg
aatcccaagctgttgcaagggcgagttgggcagatgctccccccggcgccaggcttccgc
gccttcttcagcgccccaccccccgctacaccaccccctccgcagcagcatccccctggc
ccaggaccccacctgcaaaacctaagatcacaggctccaatgtttagaccagacacaacc
caccttcatccacagcaccgtcgacttttgcatcagagacagcaacagaatagaaatcaa
catcggaatctcaacggtgcaggagacagagggagtcaccggagcagtcatcaggatcat
atccgaaaggatccgtatgccaacctcatgctgcagcgagaaaaagactgggtctctaaa
atccagatgatgcaactgcaaagcactgatccctacctggatgatttttattatcagaat
tactttgaaaaactggagaaactgtcagctgctgaagaaatgcaaggtgacggcccaaaa
aaggagcgtaccaagctcatcacacctcaggtggccaagctggagcacacctacaagcca
gtgcagtttgagggctctttgggaaagctcactgtctctagtgtgaataatccccgaaaa
atgattgatgctgttgtgacgtctcggagtgaggatgatgagacaaaagaaaaacaggtt
cgggacaaaagacgaaaaacccttttcataattgagaaaacctatagtttactgcttgat
gtggaggattacgaaaggcgttatctcctaagtctggaagaagagcgacctgccttgatg
gatgaaagaaagcacaaaatttgttgcatgtatgacaacttaagggggaaattgcctgga
caggagaggccgagtgatgaccactttgtacagatcatgtgtatccgaaaggggaagaga
atggtggcccggattctgcctttcctctccacagagcaagcagctgacattctcatgaca
acagccaggaacctccctttcctcatcaagaaggacgcacaggatgaggtgctgccatgc
ctattgagtcccttctctctcctcctctaccatcttccaccagtgaccgtcaccagcctt
ctgcagcagctgatgaacctacctcagagtgcagcggccccagctccgtccaacccacac
ctctctgccgtgctccagaacaagtttggcctgtccctgctcctcgtcgtcctgagccgc
ggggaagacctacagagctcagacgccgcttcagaatcggcgcaaagcaacccatggacg
gaggtgatgtttgtggcaacccgagaacttttgcggattccccagacgggcctggccaag
ccaatctctatacccacaaacctagtatccctcttttctcgttacgttgaccgacagaaa
ctgaacttgctggagacaaaactgcagtaa
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