Bubalus bubalis (water buffalo): 102391072
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Entry
102391072 CDS
T05912
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bbub04040
]
102391072 (SCN11A)
Ion channels [BR:
bbub04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102391072 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
102391072
NCBI-ProteinID:
XP_025128114
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All DBs
Position
21:complement(12216627..12298847)
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AA seq
1785 aa
AA seq
DB search
MDDRCYPVIFPDGRNFRPFTPDSLAAIKKRIAIQKEKKKSKDWKAAEPEPRPQLDLKVSR
KLPKLYGDIPRDLIAKPLEDLDPFYSNHKTFMVLNKKRTIYRFSAKRALFILGPFNSIRS
LAIRISVHSLFSMFIICTVIINCVFMALAHQKSSIDVKTDHAEYVFLGIYLFEALVKILA
RGFILDEFSFLRDPWNWLDSIVIATAFVSYSPYINDSSFSLSSLRTFRVFRALKAISVIS
GLKVIVGALLHSVKKLVDVMILALFCLSIFALVGQQLFMGNLRYKCVSNSCKDHYQDYYQ
DYCFKKEESTEFKMCGMWMGNRACPEQYECKDSKKNPDYNYTNFDNFGWSFLAMFRLMTQ
DSWEKLYRQTVRTSGLISVLFFVVVIFLGSFYLVNLTLAVVTMTYEEQNKNVAAETEAKE
KMFQEAQQLLKEEKEALVAMGIDRSSLNSLEASSFSPKKRKLFGSKKRKSFFLRKSGKDQ
IPGSDSDEDSSKKPHLLEQTKRLSQNLSVDRCDEHGDSFQRQRALSAVSILTITMQEQEK
SQEPCLPCGENLASKYLVWDCSPWWLDIKKVLRTVMTDPFTELAITICIIINTVFLAMEH
YKMDQNFENILYTGNLVFTGIFMAEMCLKIIALDPYHYFRRGWNIFDSVVALLSLADVIL
NHIVSGKSWISFRSLRVLRVFKLAKSWPTLSTLIKIIGHSVGALGNLTVVLAIVVFIFSV
VGMQLFGSKFNNRKNNLKSCDPEVLCLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQE
ANPTLCVIVFLSIMVIGKLVVLNLFIALLLNSFSNEERNGYLEGKVKKTKVQIALDRFRR
AFCFVIHTLEHFFRKRCRKRHLSKQKEVTEGPGGESKDIIPLVTGMRKGPEIWEEFGVLT
SVPMTLHDRTWLAPLAEEEDDAEPPGEDKAQAVTQPEAGKQCQASEVHQKSKDLTSPGIQ
SVEIDLFSGDDPPLSIQNLRKKSDATSVLSECSTIGPQDPFMRVLEMIPKKEPERCLPKG
LNCCSLCCTVDKRKSSWITWWSLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDINLDK
QPKIQELLKCTDTIFTYIFILEMGLKWVAFGFRKYFTSVWCWLDFVIVIVSVTSLIDLMG
LKSFRILRALRPLRALSQFEGMKVVVYALIGAIPAILNVLLVCLIFWLIFCILGVSLFSG
KFGRCVNATDVKSVIDYHIVANRNQCESGHFYWDTPDVNFDNVLMAYLALLQVATFKGWM
DIMYAAVDSTEEGQQPQFEARSCMYLYFVVFIIFGSFFTLNLFTGVIIDNFNQQQKKISG
QDVFLTEEQKKYYNAMKKLGSKKPQRPIPRPQNKCQGFVFDLVTHQVFDIIIIILILLNM
LSMMAETHNQSETMKHLLECLNMAFVVIFAIECFIKIFALRQYYFANGWNLFDCVIVLLS
IVSSVVSALKTQAQIPFPPTLFRMVRLVRIGRILRLVRAARRIRTLLFALMMSLPSLFNI
GLLLFLVMFIYAIFGMNSFRKVKEESGIDDIFNFQTFTSSMLCLFQITTTAGWDALLSPM
LKSNKSCDPKTESCHLSTIAIIYFVTYIIISSLIVVNMYIAVILENFNVATEESEDPLGE
DDFEMFYEVWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSGDRL
HCLDILFAFTTRVLGESSGLDSMKAAIEEKFMETNPFRKLYEPIVTTTKRNEEERCAAAV
IQKAFRKYMLKTRCTLKDRPHSTLQTLSNGDLPSSGVAEGKVHYD
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggtgctacccagtgatctttccagatgggaggaatttccgccccttcact
cctgactctttggctgcaatcaagaagcggatcgccatccaaaaggagaaaaagaagtcc
aaagattggaaagcagcagaacccgagcctcgacctcaactcgacctaaaggtctccagg
aagttgcccaagctttatggtgacattccccgtgacctgatagcaaagcccctagaagac
ttggacccattctacagcaatcataagacatttatggtgttgaacaaaaagagaacaatc
taccgcttcagcgccaaacgtgccttgttcattttggggcctttcaattcaatcagaagt
ttggccattagaatctcagtccattcattgttcagcatgttcatcatctgtactgtcatc
atcaactgcgtgttcatggccttagctcatcagaagagcagcattgacgtgaaaactgac
catgctgagtatgtcttccttgggatttatttatttgaagcattagttaaaatattggca
agaggttttattctggatgagttttctttcctgcgagatccgtggaactggctggactcc
attgtcattgcaacagcatttgtatcatattctccatatatcaatgacagcagcttcagt
ctgtcatccctgcgtaccttccgagtattcagagctttgaaagcaatttcagtaatttca
ggtttgaaggtcattgttggggccttgctgcactctgtgaagaagcttgtcgatgtgatg
atcctggctctcttttgcctcagcatcttcgccctggtaggtcagcagctcttcatggga
aatctgaggtacaaatgtgtcagtaattcctgtaaagatcactatcaagattactatcaa
gactattgctttaaaaaggaagagtccactgaattcaaaatgtgtggcatgtggatgggc
aacagggcttgtcctgaacaatatgaatgcaaagatagcaaaaaaaatcctgactataac
tacacaaattttgacaactttggctggtcttttcttgccatgttccggcttatgacccaa
gattcctgggagaagctttatcgacagaccgtgcgtacctcagggctcatctcggtcctc
ttctttgtggtggtcatcttcctgggctctttctacttggttaacttaaccctggctgtt
gtcaccatgacttatgaggaacagaacaagaatgtagctgctgaaacagaagccaaggag
aagatgtttcaggaagcccagcagctgttgaaggaggagaaggaggctctggttgccatg
ggaattgacagaagttcacttaattcccttgaagcatcatctttttccccaaagaagaga
aagctatttggtagtaagaaaagaaaatccttctttttaagaaagtctgggaaagaccag
attccaggatcagattctgatgaagattcttcaaaaaagccgcacctccttgagcaaacc
aaacgactgtcccagaatctgtcagtggaccgctgtgatgagcacggagactccttccaa
aggcagagggcgctgagtgctgtcagcatccttaccattactatgcaggaacaagaaaaa
tcacaggagccttgcctcccatgtggggaaaatctggcatccaaatacctcgtgtgggac
tgtagcccctggtggctagacattaagaaggtcctgagaaccgtgatgactgatcccttt
actgagctggccatcaccatctgcatcataatcaacactgtcttcttggccatggagcat
tacaaaatggaccagaattttgagaatatattgtacacagggaacttggttttcactggc
attttcatggctgaaatgtgcctaaaaatcattgctctggatccctaccactactttcgt
cgaggatggaacatttttgacagtgttgttgctcttctgagtttggcagatgtgatatta
aaccatatagtttcaggaaaaagttggatatcatttcgttccttaagagtgctgagggtc
ttcaagttagccaaatcctggccaactttaagcacactgattaagatcattggccattct
gttggagcccttggaaacctgactgtggtcttggccattgtggtctttattttctcagta
gttggcatgcagcttttcggctctaaattcaataacagaaagaataatttaaagtcctgt
gaccctgaagtcctgtgtttacggcgctggcacatgggggatttctaccactcctttttg
gtggtgttccgcatcctctgtggcgaatggattgaaaacatgtgggaatgtatgcaagaa
gctaacccaacgctgtgcgttattgtgtttctgtcgatcatggtgattggaaaacttgtg
gtactcaacctcttcattgccttgctactcaattccttcagcaatgaggagagaaatgga
tacttggagggaaaagtcaagaaaaccaaagtccagatagccctggatcggttccgccgg
gctttttgttttgtaatacatactcttgagcattttttcaggaagcggtgcaggaagcga
catttatcaaagcaaaaagaggtgacagaaggccctggtggagagagcaaagatatcatt
cccctggtcacagggatgagaaagggcccagagatctgggaggagtttggtgtactaact
tctgtaccaatgaccttgcatgatcggacttggttggccccacttgcagaggaagaagat
gatgctgaaccccctggtgaagataaggcacaggctgtcacacaacctgaggctggaaaa
cagtgtcaggccagcgaagtccatcagaagagcaaggatctcactagtccaggaattcag
agtgtggaaattgatctattctctggagatgatcctcctttgtcaatacagaatcttcgg
aagaagtctgatgctacgagtgtgctctcagaatgtagcaccattggtccacaggatccc
tttatgcgggtacttgaaatgattcccaaaaaggaaccagagaggtgtttgcccaaaggc
ctgaattgctgctctctatgctgtactgtggacaagagaaagtcctcctggatcacttgg
tggagcctgcgaaaaacctgctaccaaatagtgaaacacagctggtttgagagctttatt
atctttgtgattctgctgagcagtggggcactggtatttgaagatattaaccttgataaa
caacccaaaatccaagaattacttaaatgtactgacactattttcacatacatttttatc
ttggagatgggtctgaaatgggtggcctttggatttaggaaatatttcacaagtgtctgg
tgctggcttgatttcgtcattgtgattgtctctgtgaccagtctcatcgacctaatgggc
ttgaagtccttccggattcttcgagcactgaggcccctgcgcgcactgtcccagtttgaa
ggaatgaaggtggtagtttatgctctcataggtgccatacctgctattctgaatgttttg
cttgtctgcctcattttctggctcatattttgtatcctgggagtaagtctgttttctgga
aaatttggaagatgtgttaatgcaacagatgtaaaatcagtcatagattatcacattgtt
gcaaaccggaatcaatgtgaaagtggacatttctactgggacaccccggacgtcaacttt
gacaatgtgttaatggcttaccttgcgctactgcaagtggcaacatttaagggctggatg
gatattatgtatgcagctgttgattccacagaggaaggacaacagccacagtttgaggca
cgttcttgcatgtacctttacttcgtagtttttatcatctttggctcattcttcactctg
aatctctttactggtgttattattgacaacttcaaccaacagcagaaaaagataagtggc
caagacgtctttctgacagaagaacagaagaaatactataatgcaatgaaaaaattagga
tccaaaaaacctcaaaggcccattccaaggcctcagaacaaatgccaaggctttgtgttt
gacctcgtcacacaccaggtctttgacatcattatcatcatcctcattctcctcaacatg
ctgagcatgatggctgaaacacataaccagtcggaaaccatgaaacatttacttgagtgt
ctcaacatggcctttgtggtcatctttgcaattgagtgtttcatcaaaatctttgctttg
aggcaatactacttcgccaatggctggaatttatttgattgtgtgatcgtgctcctttct
atcgttagttccgtggtttctgccttgaaaacccaggcccagattcctttccctccaaca
ctgttcagaatggttcgcttggttcgtattggccgaatcctgagacttgttcgagcagca
cgaagaatcagaactctgcttttcgctctgatgatgtccctgccctctctattcaatatt
ggtcttctcctctttctggttatgtttatttatgccatttttggtatgaactcttttcga
aaagtgaaggaagagtctggaattgatgacatcttcaacttccaaacttttacaagcagc
atgctctgcctcttccagataaccacaacagcaggctgggatgccctcctcagccccatg
ttgaaatcaaacaagtcctgtgaccccaagacagagagctgccacctctctaccatagcc
ataatctacttcgtcacttatatcatcatctcctctctcattgtggtcaacatgtatatt
gctgtgattttagaaaacttcaatgtagccactgaagaaagtgaggaccctttgggtgaa
gatgactttgaaatgttctacgaagtctgggaaaagtttgacccagaagcaacacaattt
atcaaatattctgccctttctgactttgctgatgcccttcctgagcctctgcgtgtggca
aagccaaataaataccaatttttagtcatggacctgccaatggtgagtggagatcgtctc
cattgcttggatattctcttcgctttcaccacgagggtacttggtgagtccagtggcctg
gatagcatgaaagcagcaatagaagagaagtttatggagaccaaccctttcaggaagtta
tatgaacccatagtcaccaccaccaaaaggaatgaagaggaacgatgtgctgctgctgtt
attcaaaaggcctttcgaaagtacatgctgaagaccaggtgtaccttgaaagacaggcct
cattcaaccctccagacactctccaatggagacttacccagctctggggtggccgagggc
aaggtccattatgactga
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integrated database retrieval system
