Bubalus bubalis (water buffalo): 102391386
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Entry
102391386 CDS
T05912
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102391386 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102391386 (PARN)
Enzymes [BR:
bbub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102391386 (PARN)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102391386 (PARN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_R3HCC1L
R3H
RRM_Thc1
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
102391386
NCBI-ProteinID:
XP_006049827
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All DBs
Position
24:28669359..28853710
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDFINNTALAELEKRLKETPFNPPEV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKSHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVPIAVNTSRYAESYRIQTYADYVGKKREEKQMKRKWTEDSWKEVEPKRLN
TQCVSYSLQNHHYHANSLTATSAVGKRNLSPSRAEAGLEARASGEISDTELEQTDPCAEP
LSEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttctcaggaatcagcgatggaccttcagtc
accgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccatacttaaaccaggaagaagaaaga
cagttaagagagcagtatgatgagaaacgttcgcagtccaacggtgcaggtgctctgtcc
tacacatctcccaacacttcaaagtgtcccgtgacaattcctgacgatcagaagaagttt
attgaccaagtggtagagaaaatagaggatttattacaaagtgaagaaaacaagaatttg
gatttagagccatgtactgggttccaaagaaaactgatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaaccgaaaagaaagagcgatatattgtt
atcagcaaagtagatgaagaagaacgcaaaagaagagagcaacagaaacatgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgctaattcg
gggaagcttgtcattggacacaacatgctcttggatgtcatgcacacggttcatcagttc
tactgccctctgcctgcggacttaaatgaatttaaggagatgacaacatgtgttttcccc
aggctcttggatacaaaattgatggccagcacacaaccttttaaggatttcattaacaac
acagcccttgcagaactggagaagcggttaaaagagacacctttcaaccctcctgaagtt
gaaagtgcagaaggctttccaagttatgacacggcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactgtgtttcatctccatggccaactacctaggttctttt
cttagtcctccaaagagtcatgtgtctgccagatcaaaactcatcgaacctttttttaac
aagttgtttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcatgtcctccacgtgacattccccaaagaatggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcttggattgatgacacatca
gcatttgtttctctcagccaacctgagcaagttccgattgctgtcaataccagcaggtat
gcagagagctatcgcatccagacctatgctgactatgtcgggaaaaaacgagaggagaag
cagatgaagagaaagtggacagaagatagttggaaggaggttgagccaaagcggctaaac
acgcagtgtgtctcctacagtttgcagaatcaccattaccacgccaacagtctcacagcc
accagcgcagtaggaaagagaaacctgagtcccagtcgagcagaagccggcctggaggcc
cgagcatcgggggagatttctgacactgagcttgagcagacagatccctgtgcagaaccc
ctctcagagggaaggaaaaaagccaagaaactaaaaaggatgaagaaggacctttctcca
acaggaagcatctcagacagctcagccaagctcttcgaagtccccgacacgtggtaa
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