Bubalus bubalis (water buffalo): 102391720
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Entry
102391720 CDS
T05912
Symbol
RORC
Name
(RefSeq) nuclear receptor ROR-gamma isoform X1
KO
K08534
RAR-related orphan receptor gamma
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04659
Th17 cell differentiation
bbub04710
Circadian rhythm
bbub05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
102391720 (RORC)
09159 Environmental adaptation
04710 Circadian rhythm
102391720 (RORC)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
102391720 (RORC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102391720 (RORC)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
bbub03310
]
102391720 (RORC)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
102391720 (RORC)
Nuclear receptors [BR:
bbub03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
102391720 (RORC)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
102391720
NCBI-ProteinID:
XP_025143610
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Position
6:19051642..19078900
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AA seq
611 aa
AA seq
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MQKGQCPSRHLFCLSSRPQTLFLPSLPLSPPDAGTLCQPLLSPACCRARCSLLLPLPSPG
PCSLPSWAARAARTAPRELPHGQGPTETPPSLAGDGGSRPASKDDKELLAAKKTHTSQIE
VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCR
LQKCLALGMSRDAVKFGRMSKKQRDSLHAEVQKQLQQRQQQQREQAAKTPPVGAQGADTL
ACTLGHPDGQLPLGSSPDLPEASACPPSLLRAPGCGPSYSNSLAKTGLNGASYHLEYSPE
RGKAEGRENFYGTGSQLAPDRGGLHSEDPRRPGLGEPGRGLDSYFTPSFRSTPEVPYASL
TEIEHLVQNVCKSYRETCQLRLEDLLRQRSNIFSREEVAGYQRKSMWEMWGRCAHRLTEA
IQYVVEFAKRLPGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNDTVFFEGKYGGVEL
FRALGCSELISSIFDFSRSLSALRFSEDEIALYTALVLINANRPGLQEKRKVEQLQCNLE
LAFHHHLCKTHRQGILAKLPPKGKLRSLCSQHVEKLQTFQHLHPIVVQAAFPPLYKELFS
TEIESPEGLSK
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaggccagtgtccttcccgtcacctattctgtctctcctcaaggccccagact
ctgttcctcccatctctccctctgtcccctcctgatgccgggacgctctgccagccactc
ctttcccctgcctgctgtcgggccaggtgctccctcctcctccctcttccctcccctggg
ccctgctccctgccctcctgggcagccagggcagcaaggacggcaccaagggagttgccc
catggacagggccccacagagacaccaccgagcctcgcaggcgacggaggaagccgtcct
gcctctaaagatgacaaagagctgctggctgcaaagaagacccacacctcacaaattgaa
gtgattccgtgtaaaatctgtggggacaagtcatctgggatccactacggggttatcacc
tgtgaggggtgcaagggcttcttccgccggagccagcagtgcaacgtggcctactcctgc
acgcgccagcagaactgccccatcgaccgcacgagccgcaaccgatgccagcactgccgc
ctgcagaagtgcctggccctgggcatgtcccgagatgctgtcaagtttggccgcatgtcc
aagaagcaaagggacagcctgcatgcagaggtgcagaaacagctgcagcagcggcaacag
cagcaacgggaacaagcggccaagacccctcccgtgggagcccaaggagcagacaccctc
gcctgcaccttggggcacccggatgggcagctacccctgggctcctcgcctgacctgcca
gaggcctcagcctgtccccccagtctcctgagggctccaggctgcgggccctcctactcc
aacagcctggccaagactgggctcaatggggcctcgtaccacctggaatatagccctgag
cggggcaaggctgagggcagggagaacttctatggcacaggcagccagctggccccagac
aggggcggacttcactctgaggaccccaggcgtcctgggcttggggagccaggacggggc
ctggacagctacttcacccccagtttccgcagcaccccagaggtgccttatgcttccctg
acagagattgagcacctggtgcagaacgtttgcaagtcctaccgggagacatgtcagctg
cggctggaggacctgctccgtcagcgctccaacatcttctcacgagaggaggtggctggc
taccagaggaagtcgatgtgggagatgtggggacgctgtgcccaccgactcaccgaggcc
attcagtatgtggtggagttcgctaagaggctcccgggctttatggagctctgccagaac
gaccagatcgtgctactcaaagcaggagccatggaagtggtgctggtcaggatgtgccgg
gcctacaacgctgacaacgacacagtcttttttgaaggcaaatacggtggcgtggagctg
ttccgagccttgggctgcagtgaactcatcagctccatctttgacttctcccgctccctg
agtgccttacgcttttcagaggacgaaatcgccctctacacagccctcgtcctcatcaat
gccaaccggccagggctccaagagaaaagaaaagtagaacagctgcagtgcaatctggag
ctggcctttcatcatcatctctgcaagactcatcgccaaggcatcctggcaaagctgcca
cccaaggggaagctgcggagcctgtgtagccagcacgtggaaaagctgcaaaccttccag
catctccaccctatcgtggtccaagctgctttccctccactctacaaggaactcttcagc
actgaaatcgagtcacccgagggactgtccaagtga
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