Bubalus bubalis (water buffalo): 102391895
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Entry
102391895 CDS
T05912
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain isoform X2
KO
K06236
collagen type I alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04611
Platelet activation
bbub04820
Cytoskeleton in muscle cells
bbub04926
Relaxin signaling pathway
bbub04933
AGE-RAGE signaling pathway in diabetic complications
bbub04974
Protein digestion and absorption
bbub05146
Amoebiasis
bbub05165
Human papillomavirus infection
bbub05205
Proteoglycans in cancer
bbub05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102391895 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102391895 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102391895 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102391895 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
102391895 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
102391895 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
102391895 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
102391895 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102391895 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
102391895 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
102391895 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102391895 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102391895 (COL1A1)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102391895 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
102391895
NCBI-ProteinID:
XP_044795026
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All DBs
Position
3:complement(26639932..26656908)
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AA seq
1397 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDELKDCPNAKVPTDECCPVCPEGQESPTDQETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGPP
GPKGNSGEPGAPGSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLPGPPGER
GGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSP
GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV
GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDL
GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ
GMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPS
GPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDSGPPGPAGPA
GPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSK
GPRGETGPAGRPGEVGPPGPPGPSGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR
GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRD
GSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVGARGPA
GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA
GSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFLPQPPQE
KAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHS
DWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKEKRHVWYG
ESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKA
LLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDV
GAPDQEFGFDVGPACFL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaggaagaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgctgtgcgatgacgtgatctgcgacgaacttaaagac
tgtcctaacgccaaagtccccacggacgaatgctgccccgtctgccccgaaggccaggaa
tcacccacggaccaagaaaccaccggagtcgagggacccaaaggagacactggcccccga
ggcccaaggggacccgccggcccccctggccgagatggcatccctggacaacctggactt
cccggaccccctggaccccccggacctcccggaccccctggcctcggaggaaactttgct
ccccagttgtcttatggctatgatgagaaatcaacaggaatttccgtgcctggtcccatg
ggtccttctggtcctcgtggtctccctggcccccctggtgcacctggtccccaaggcttc
caaggcccccctggtgagcctggcgagcccggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgatggcgaagctggaaagcctggtcgtcct
ggtgagcgcgggcctcccggacctcagggtgctcggggattgcctggaacagctggcctc
cctggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggccccaagggcgagcctggtagccccggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccccggagcccctggccctgctggcaac
cctggtgctgatggacagcctggtgctaaaggtgccaatggcgctcctggtattgctggc
gctcctggcttccctggtgcccgaggcccctctggaccccagggccccagcggcccccct
ggtcccaagggtaacagcggtgaacctggtgctcctggcagcaaaggagacactggcgcc
aagggagaacccggtcccactggtattcaaggcccccctggccctgctggggaagaagga
aagcgaggagcccgaggtgaacctggacctgctggcctgcctggaccccctggcgagcgt
ggcggacctggaagccgtggtttccctggcgcggacggtgttgctggtcccaagggtcct
gctggtgaacgcggtgctcctggccctgctggccccaaaggttctcctggtgaagctggt
cgccccggtgaagctggtctgcccggtgccaagggtctgactggaagccctggcagcccg
ggtcctgatggcaaaactggcccccctggtcccgctggtcaagatggccgccctggaccc
ccaggccctcccggtgcccgtggtcaggctggcgtgatgggtttccctggacctaaaggt
gctgctggagagcctggaaaagctggagagcgaggtgttcctggaccccctggggcagtt
ggtcctgctggcaaagacggagaagctggagctcagggacccccaggacctgctggcccc
gctggtgagagaggcgaacaaggccctgctggctcccctggattccagggtctccctggc
cctgctggtcctcctggtgaagcaggcaaacccggtgaacagggtgttcctggagatctt
ggtgcccccggcccctctggagcaagaggcgagagaggcttccccggcgagcgtggtgtg
caagggccgcccggccctgcaggtccccgtggggccaatggtgcccccggcaacgatggt
gctaagggtgatgctggtgcccctggagcccctggtagccagggtgcccctggccttcaa
ggaatgcctggtgaacgaggtgcagctggtcttccaggccctaagggtgacagaggggat
gctggtcccaaaggtgctgatggtgctcctggcaaagatggcgtccgtggtctgactggt
cccatcggtcctcctggccccgctggtgcccctggtgacaagggtgaagctggtcctagc
ggcccagccggtcccactggagctcgtggtgcccccggtgaccgtggtgagcctggtccc
cccggccctgctggcttcgctggcccccctggtgctgatggccaacctggtgctaaaggc
gaacctggtgatgctggtgctaaaggtgactctggtccccccggccctgctggacctgct
ggaccccctggccccattggtaacgttggtgctcctggacccaaaggtgctcgtggcagc
gctggtccccctggtgctactggtttcccaggtgctgctggccgagtcggtccccccggc
ccctctggaaatgctggaccccctggccctcctggccctgctggcaaagaaggcagcaaa
ggcccccgtggtgagactggccccgctgggcgtcccggtgaagtcggtccccctggtccc
cctggcccctctggtgagaaaggagcccctggtgctgacggacctgctggcgctcctggc
actcctggacctcaaggtattgctggacagcgtggtgtggtcggcctgcctggtcagaga
ggagaaagaggcttccctggtcttcctggcccctctggtgaacccggcaaacaaggtcct
tctggagcaagtggtgaacgtggcccccctggtcccatgggcccccctggattggctgga
ccccctggcgagtctggacgtgagggagctcctggtgctgaaggatcccctggacgagat
ggttctcctggcgccaagggtgaccgtggtgagaccggccctgctggacctcctggtgct
cctggcgctcccggtgcccccggccctgtcggacctgctggcaagagcggtgatcgtggt
gagactggtcctgctggtcctgctggtcccattggccccgttggtgcccgtggccccgct
ggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggcgacagaggcatt
aagggtcaccgtggcttctctggtctccagggtccccctggccctcccggctctcctggt
gagcaaggtccttccggagcctctggtcctgctggtccccgcggtccccctggctctgct
ggttctcctggcaaagatggactcaatggtctcccaggccctatcggtccccctgggcct
cgaggtcgcactggtgatgctggtcctgctggtcctcccggccctcctggaccccctggt
cccccaggtcctcccagcggcggctacgacttgagcttcctgccccagccacctcaagag
aaggctcacgatggtggccgctactaccgggctgatgatgccaatgtggtccgtgaccgt
gacctcgaggtggacaccaccctcaagagcctgagccagcagatcgagaacatccggagc
cctgaaggcagccgcaagaaccccgcccgcacctgccgtgacctcaagatgtgccactcc
gactggaagagcggagaatactggattgaccccaaccaaggctgcaacctggatgccatt
aaggtcttctgcaacatggagaccggtgagacctgtgtgtaccccactcagcccagcgtg
gcccagaagaactggtacatcagcaagaaccccaaggaaaagaggcacgtctggtacggc
gagagcatgaccggcggattccagttcgagtacggcggccaggggtccgatcctgccgat
gtggccatccagctgactttcctgcgcctgatgtccaccgaggcctcccagaacatcacc
taccactgcaagaacagcgtggcctacatggaccagcagactggcaacctcaagaaggcc
ctgctcctccagggctccaacgagatcgagatccgggccgagggcaacagtcgcttcacc
tacagcgtcacctacgatggctgcacgagtcacaccggagcctggggcaagacagtgatc
gaatacaaaaccaccaagacctcccgcttgcccatcatcgatgtggcccccttggacgtt
ggcgccccagaccaggaattcggcttcgacgttggccctgcctgcttcctgtaa
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