Bubalus bubalis (water buffalo): 102392038
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Entry
102392038 CDS
T05912
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102392038 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
bbub04091
]
102392038 (FREM1)
Lectins [BR:
bbub04091
]
C-Type lectins
Lecticans
102392038 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Cadherin_5
Motif
Other DBs
NCBI-GeneID:
102392038
NCBI-ProteinID:
XP_044795776
LinkDB
All DBs
Position
3:91946079..92128112
Genome browser
AA seq
2180 aa
AA seq
DB search
MSSPSWGGLGALLLLLLLPGWASPTFVHVNQGVRVMKGSSAFLSQDDLKFTIPKEKDACK
VEVVMNEPITQRVGKLTPQVFDCHFLPNEVKYTHNGCPILDEDTVKLRLYRFTETDTFTE
TFILRVYLLEPDCNIIHMSDNALEVSEFYGLSRVIDKNLLRFDYERMASLECTVRLDPVG
TQLPAHGQLVLVEPQLEEPRGDQPHSFFPESQLGTELKCPGGRCTLGLKKVGSLKVSCEE
FLLMGLRYQHLGSPSPNIDYFSIQLDLTDSRSKITYKSESAWLPVYIRPGIPNQIPRAAF
MAMFILEVDQFILTSLTTSVLDCEEDETPKPLLVFNITKAPLQGYVTHLWDHTRPVSSFT
WKDLKDMQIAYQPPNSSHSERRLYEVELEVYDFFFEKSAPITVHISIRTADTNAPRVSWN
TGLNLLEGQSRAITWEQFQIVDNDDIHAVQVVTVDGLQHGRLTVRGGKGFLFTVADLQAG
VVRYHHDDSDSSKDFVVFRIFDGRHSVQHKFPINILPKDDSPPFLITNVVIELEEGQTIL
IQGSMLRASDMDSSDDYIFFNITKPPQAGEIMKKPAPGLIGYPVPGFIQRDLFNGIIYYR
HFGGEIFEDSFEFVLWDSHEPPNLSVPQVVTIHVTPVDDQLPKEAPGVSRHLVVKETEVA
YITKKHLHFIDTESQDRELLYAITTPPFFSSSRRHLDAGKLFMVDSIPRLTKTPAAPGLK
YFTQHAVNHMKVAYMPPMQDVGPHPRHVQFAFSVSNQHGGTLYGICFNITILPVDNQAPK
VFTKPLRVAEGGQCAVSTEHVLVSDEDTEPDNIHLSLQSPPQHGTVELNGSPLNTGATFP
WGDLQAFKLRYQHDGSEELQDDIVLQVTDGTNAAEYVLHVEVFPVNDEPPVLKADLIPMM
HCSEGEEVVITSEYIFATDVDSDDLKLMFMIVGEPQHGTVRRAGVTVHQFSQEDVVAGAV
TYKHTGGEIGLMPCFDTITLVVSDREAGPFVNGCCYNGPYPSVPLHESFPMYDLNITVYP
VDNQPPSVAIGTIFVVDEGFSAALTVNHLSAADPDTAEDDLEFVLVSPPQFGYLENTLPS
AGFEKSNMGISIASFQWKDMKALHINYVQSRHLGMEPTADKFVLYVTDGKRRSMEIPFYI
IINATNDEAPDFIVQNITVCEGQMRELDSSIISATDRDIPKNPLLFSITHKPRHGLLINR
AFSRNFFQYKQSANPGQKHELVYNFSMELLKNGMRLMYVHDDSESLADDFTIQVSDGKHK
ILKTIFVEVTPVNDEKPMLSKKAEITMNMGETRIISSAVLSAIDEDSPREKIYYIFERIP
QNGQLQLKIGRDWVPLYPGMKCTQEEVDLNLLRYTHTGAMDSKNQDSFTFHLWDGDNRSP
AFDCHITIKDTGRGDIVILAKPLVVSKGDRGFLTTTTLLAVDGTDKPEELLYVITSPPQF
GQVEYVRYPGVPITSFSQMDIAGQTVCYVAKSTTAVHRDTFRFIVSNGLQTKPGVFEITL
ETVDTALPVVTRNKGLRLVEGATGLLSPDLLQLTDPDTPAEKLTFLLAQLPRHGQLYLRG
MALIPHNFTQLDVDSGHVAYRHLGGDSWTDHFTFVATDGMNHGFLVDGRVWQEPVSFTIQ
VDQLDKAAPRVTHLHSPSQVGLLKNGCYGIYITSRVLKASDPDTDDNQIIFKILRGPQHG
HLENSTTGEFIHEKFSQKDLNSKTILYIINPSLEVNSDTMEFQVMDPTGNSATPQCLELK
WSHIEWLRTEYEVCENMGMLPLEITRRGYSVDSAFVTVQVNQVSATVGKDFTMTPSKLVQ
FDPGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKTAVKILDSKGGQCHPSY
AFNPSMPSAWEKGIWHLLSAGASSPTTSDSFHLERRPLPASKQLAVTRGDALWDFGSEDL
SPVKLRTRGDGKTVPPSSVYRNRTDINYNYHGVISLKLEDDGSPARRRKANVSFISEPQK
TTKVAEPPQADKEESTTGSHFPRQDPLPSFPKNCTLDLKGLFHFEESLQKLYKCDGIAWR
SWSPHTKEVEDKSCPAGWHRHSGYCHSLITEQKGTWTTAAQACREHHQGSLVTVISRQHM
RWLWDISGRKPFWIGLNDQVRAGHWEWIGGEPVTFTNWRRGPPQRSRHGKDCVLVQRPGK
WHTKDCRKGKSHSYVCSRKL
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atgagctctccaagctggggtgggcttggtgccctgctcctgctgctgctgctcccaggc
tgggccagccccacctttgtccatgttaaccaaggggtcagggtgatgaagggcagttcc
gccttcctgtctcaagatgacctgaagttcaccatccccaaagagaaagatgcctgcaaa
gtggaagtcgtgatgaatgagccaataacccagagggttgggaaactcactccacaggtc
tttgactgccatttccttcccaatgaagtaaaatatactcataacggttgcccaattctt
gatgaagacacagtgaaacttagactttacaggtttaccgagacagacaccttcacggaa
acctttatcctgcgggtctacctcctggaaccagactgtaacatcatccacatgagtgat
aatgcactggaggtgtctgagttctatggcctgtcccgagtcattgataagaacctgctt
agatttgattacgagaggatggccagcctggaatgtacagtcagactggaccctgtggga
actcagctgccagcccacggccagttggttctggtggagccccagctggaagaacctcgt
ggagatcagccacatagtttcttccctgagtctcaattgggaacagagctgaagtgtcca
ggtggcaggtgtaccctgggactgaagaaagtcggaagtctcaaagtgagctgtgaggag
ttcctgctgatggggcttcgataccagcacctgggttccccttctcccaacattgattac
ttctccatccaactggacctcacagatagcaggagtaaaatcacatacaagtcagagagc
gcgtggttgcctgtctatatcagacctggaattcccaatcagattccaagagctgcattc
atggccatgtttattctggaagtggatcagttcatcctgacctcattgactacatcggtt
ctggactgtgaagaggatgagacccccaaacccttgctggtgttcaacattactaaagcc
ccactccagggctatgtgactcacctgtgggatcacaccagaccagtgtcctccttcacc
tggaaggatctaaaggatatgcagattgcctatcagccaccaaacagcagtcattctgag
aggagactttatgaggtggagttggaggtctatgacttcttctttgagaagagtgcacct
attacagtccacatctccatcagaacagcagatacaaatgccccgagagtgtcctggaac
acaggtctgaatctcctggagggacagtctagggccatcacatgggaacagtttcagatt
gtggacaatgatgacattcatgctgtccaggtagtcactgtggacggcctgcagcatgga
cggcttactgtgagaggggggaaggggtttctcttcaccgtggctgaccttcaggctgga
gtcgttcgatatcatcatgatgatagtgactccagcaaagactttgtggtcttcaggata
tttgacggccggcacagcgtccagcacaagtttcccatcaacatcttgcccaaagatgac
agtccgccattcctcataacaaatgttgtgattgaactggaggaggggcagaccatacta
atccagggttccatgctgagagcttcagacatggactccagtgatgactacatcttcttt
aatatcacgaaacccccacaagctggagagatcatgaagaaaccagcaccaggactgata
ggctatccagtccctggcttcattcagagggatctattcaatggcatcatttactatcgt
cactttggtggagaaatctttgaagattcatttgaatttgtcctgtgggacagccacgaa
cctccaaatctctcagtgccacaggtggtgacaatccatgtcactccagtagatgaccag
cttccaaaagaggctcctggagtttctcggcatttagttgtcaaggaaacggaggtggcc
tacatcactaagaaacatctacattttatagatacagaatcacaagacagggagctgctc
tacgcaataaccactcctccatttttctcctccagccgcagacacttagatgctgggaaa
ttgttcatggtggacagcataccaaggctaaccaagactcctgcagctccagggttaaag
tatttcactcagcacgctgtgaaccatatgaaagtggcctacatgccacccatgcaagat
gtaggtccgcatccaagacacgtccagtttgccttttccgtcagtaaccagcacggtggg
acactatatgggatctgctttaacatcacgattcttccggtggacaatcaggccccaaag
gtgtttaccaaacccctgagagtggctgagggaggccaatgtgccgtcagcacagagcac
gtcctggtttctgacgaggacactgagccggacaacatccacctctccttgcagagtccg
cctcagcatggaacggtggagctaaatggatcccctctaaacacaggggccacgtttcct
tggggagacctccaggccttcaaacttagatatcagcatgatggatccgaggaacttcag
gatgacatagtactgcaggtcacagatggcacaaatgcagctgaatatgtcctacacgtt
gaggtgttccctgtaaatgatgagcctccagtgctaaaggcggacctcattcccatgatg
cattgctccgagggggaagaggtggtcatcacttctgaatacatttttgctactgatgtg
gacagtgatgatttgaagctgatgttcatgattgttggagaacctcagcatgggaccgtg
aggagagctggggtcacggtacatcagttctctcaggaagatgttgtcgcaggggctgtg
acgtacaaacacaccggtggtgagattggcctgatgccttgtttcgacaccattacattg
gtggtttcggacagagaagctggtccttttgtgaatggctgctgttacaatggaccttat
ccatctgttcctcttcatgagtcctttccaatgtatgatctcaacatcacagtgtatcca
gtggacaaccaaccgccttcagttgccataggtaccatattcgttgtagatgagggcttc
tcagcagcccttactgttaaccatctgtctgccgctgatcctgacactgcagaagatgac
ttggaatttgttttggtttctcctccccagtttggctatcttgaaaacacactcccttct
gcaggttttgaaaagagcaatatgggcatcagcatagcttcgtttcagtggaaagacatg
aaggctttacatattaactatgtgcagtccaggcatctggggatggaaccaacggctgac
aagtttgtgttgtatgtcacggatgggaagcgacgctccatggagataccattttacatt
ataatcaacgctacaaatgatgaagctcctgattttatagtgcagaatattactgtgtgt
gagggtcagatgagagagctggattcttccatcatcagtgctactgaccgggacattccc
aagaaccccttgctgttcagtatcactcacaaaccgcgtcatggcctcctcatcaacagg
gcatttagcagaaacttttttcaatataagcaatcagccaaccctggccagaagcatgaa
cttgtgtacaacttttccatggaacttctcaagaatggaatgaggttgatgtatgtgcat
gatgattcagagagtcttgctgatgactttacaatccaggtgtcagacgggaaacataag
atacttaaaaccatttttgtagaggtcaccccagttaatgatgagaaaccaatgctgagc
aagaaggctgaaattacaatgaatatgggagaaactcgtattatttctagtgctgttctc
tcagccatagatgaagactcacccagggagaagatttactatatatttgaaagaattccc
caaaatgggcaacttcaacttaagatagggagggactgggtccctctgtaccctggcatg
aaatgcactcaggaagaagtggatttgaacttgctgagatatacacacactggggccatg
gactccaagaaccaagacagcttcaccttccacctctgggacggcgacaacaggtcaccg
gcatttgactgtcacatcaccatcaaggatacggggagaggtgatattgtcatcctggca
aaaccacttgtggtgtctaaaggtgacagaggtttcctgacaaccaccactctccttgct
gtggatggaacagacaagcccgaggaacttctctacgtcatcacctccccgccgcaattt
ggccaggttgagtacgtccgctatcctggggtccccattacaagcttcagccaaatggat
atagcaggacagacggtctgctatgtagctaagagcacgacagctgtccacagagacacg
ttcagattcatcgtcagcaatggacttcagaccaagcctggggtttttgagatcacactg
gagactgtggacacagccttacccgtggtgaccaggaacaaggggttgagactggttgaa
ggggccacgggcttgctctcccctgacctcctgcagttgactgaccctgacactccagcc
gagaagctcacctttcttctggcccagctcccacggcatggccagctctacctgcggggg
atggcactgatcccacacaatttcactcagctggacgtggacagcgggcatgtggcctat
cggcacttgggaggggattcttggactgaccacttcacttttgtggccacggatgggatg
aaccatggctttcttgtggatgggagagtgtggcaagaacctgtatcattcaccatccag
gtggaccagttggacaaagcggccccccgcgtcacacacttgcattctccttctcaagta
gggctcttgaaaaatggttgttacgggatttacatcacctcccgcgtgttgaaggcatca
gaccctgacactgatgataatcagatcatctttaagattttacgaggcccccaacatggg
catctggagaactcaacgacaggtgaatttatccatgagaaatttagccagaaggactta
aacagtaagaccattctttacatcataaacccatctttggaagtaaattcagataccatg
gaatttcaagtcatggatcccacagggaactctgccactcctcaatgtttggaactgaag
tggtctcatattgagtggttgcggactgaatatgaggtctgtgagaatatgggcatgctg
cccttggagattaccagaaggggatattccgtggactcagccttcgtgactgtacaggtc
aaccaagtgtcagctacagttggaaaggatttcaccatgactccatctaagctggtgcag
tttgacccaggaatgtcaactaagatgtggaatatagcaattacctatgacggattagag
gaagatgatgaggtctttgaagtaattctgaactcccctgtgaatgcggttcttggcacg
aagacaaaaactgcagtgaaaattttggactcaaaaggagggcagtgccatccttcatat
gccttcaatccaagcatgcccagtgcatgggagaagggcatttggcacctgctctccgca
ggggcttcctcacccaccacttctgattcctttcatctggaaagaagaccccttccagct
tccaagcagttagcagtcaccaggggtgacgccctgtgggactttggttctgaagatctt
tctccagtgaagcttaggacccgaggggatggcaaaacagttcctccatcctctgtttat
agaaatagaacagacatcaactataactatcatggggtaatttccctgaaactggaagat
gacggctccccagctcgcagaaggaaggccaacgtatcctttattagtgagccccaaaag
acaaccaaagtggcagaaccgcctcaagccgataaggaggaatccacaaccggctcacac
ttccccagacaggacccgttgccctcattcccaaagaactgcacactggacttaaaggga
ctcttccactttgaagaaagcctccaaaaactgtacaagtgcgatggaattgcctggaga
tcctggagcccccacaccaaggaggtggaagataaatcctgcccagctgggtggcaccgt
cattcaggctactgccactccttgatcacagagcagaaaggcacgtggactacagctgcc
caagcttgcagggaacatcaccaaggcagccttgtaactgtcatctccaggcagcacatg
agatggctttgggacatcagtggaagaaagccattttggataggtttgaatgaccaagtg
cgtgctggccactgggagtggattggcggtgaacctgtgaccttcaccaactggaggaga
gggcccccgcaacgttcaaggcatggcaaggactgtgttttggttcaaaggccaggaaaa
tggcacacaaaggactgtaggaagggaaaatctcacagttatgtgtgctccaggaaactc
taa
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