Bubalus bubalis (water buffalo): 102392134
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Entry
102392134 CDS
T05912
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03013
Nucleocytoplasmic transport
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102392134 (UPF3B)
03015 mRNA surveillance pathway
102392134 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102392134 (UPF3B)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102392134 (UPF3B)
mRNA cycle factors
P-body specific factors
102392134 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
102392134
NCBI-ProteinID:
XP_044793447
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All DBs
Position
X:complement(127580176..127596389)
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AA seq
472 aa
AA seq
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MKEEKEHRPKEKRVTLLTPPGATGSGGGASGDSTKGEDKQDRNKEKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL
DNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYAADNEKMTSTPET
LLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIDRVPERDKLKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKREK
LKKLDKENLSDERASGQSCTLPKRSEGEFKDEKPKRPEDESGREYRERERDYDRDQERIL
RERERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKETLRDKGKKPESTEPVGSSEKTE
KKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPTDDSTKSGDSAIEKKQVS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggagaaggagcataggcctaaggagaagcgagtaaccctcttgactccccca
ggtgctacaggcagcggcggtggggcttcgggagacagcaccaaaggggaagataagcag
gatcggaacaaggagaagaaagaggcgttgagcaaggtggtaattcggagattaccgccc
actttgaccaaggagcagcttcaggaacatcttcagcctatgcctgagcatgattatttt
gagtttttttctaatgatactagtttgtatcctcatatgtatgcaagagcatacatcaac
tttaaaaaccaagaggacattattttgttcagggatcgttttgatggttatgtattcctt
gacaataaaggtcaggaatatcctgccatcgtagaatttgcaccttttcaaaaagctgca
aaaaagaagactaagaaaagagatactaaagttggaactatcgatgatgatccagaatat
agaaaatttttggagagctatgctgcggataatgagaaaatgacgtctactccagagaca
ctgctagaggaaatagaagcaaaaaatagagaactaatagctaaaaagacaactccactt
ttgagcttcctgaaaaacaagcagaggatgagagaagaaaagagagaagaaaggaggcgg
cgagaaatagaaagaaaaagacaaagagaagaagagaggagaaagtggaaagaagaagag
aaacgaaaacggaaagatatagaaaagctaaagaagatagacagagttccagaaagggac
aaattaaaggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaagaagccagaaaaaggagatgaaaaagaattggacaaaagagaaaag
ctcaagaaattggacaaagagaatctgagtgatgaaagagccagtgggcaaagttgtaca
ttgcccaagcgttctgagggtgaatttaaagatgaaaagcctaagagacctgaagatgag
agtggcagagaatacagggagagggagcgggattatgatcgagaccaagagcgcatcctg
cgggagagagagaggctgaagcggcaggaagaagagcgccgcaggcagaaggagcgctat
gagaaagagaaggctttcaagagaaaggaagaagaaatgaagaaggagaaagaaacactt
cgggataaaggaaagaagcctgaaagtacagagccagtaggcagctcagaaaaaactgaa
aagaaagaagaagtggttaagagagatcgcataagaaacaaggatcgcccggcgatgcag
ctttaccagccaggagctcgaagccgaaatcgactctgtcccactgatgacagcaccaag
tctggagattcagccatagaaaaaaagcaggtctcatga
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