Bubalus bubalis (water buffalo): 102392605
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Entry
102392605 CDS
T05912
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102392605
09123 Folding, sorting and degradation
03018 RNA degradation
102392605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102392605
03041 Spliceosome [BR:
bbub03041
]
102392605
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102392605
mRNA cycle factors
Stress granule specific factors
102392605
Spliceosome [BR:
bbub03041
]
Complex C
Other components
Complex C specific factors
102392605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_5
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
102392605
NCBI-ProteinID:
XP_025131741
LinkDB
All DBs
Position
X:complement(88091132..88094208)
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AA seq
590 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRILWSQRDPSLRKSGVGNVFGNILSCKVVCDENGSKGY
AFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSQKEREAELGAKAKEFTNVYIKNFGE
EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKV
IIVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI
TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTN
QYMQWVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG
FQGMPSAIRQSGPRPALRHLAPTGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHP
AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML
LXIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1771 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgctgagcgggccttggacaccatgaactttgatgtaattaagggaaag
ccgatccggatcctgtggtctcagagggatccgtctctgagaaaatctggtgtgggaaac
gtctttgggaacattctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaggaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcaaaaagagcgggaa
gccgaacttggagccaaagccaaggaattcaccaatgtttacatcaaaaactttggggaa
gaggttgatgatgagaatctgaaagagctatttagccagtttggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatcactgggaaggtc
attatcgttggccgtgcacaaaagaaagtggagcggcaggccgagttaaagcgaaaattt
gaacagctgaagcaggagaggattagtcgctatcagggggtgaatctctacattaagaac
ttggatgacaccatcgatgacgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtgatgctggaggatgggagaagcaaaggatttggctttgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcacggagatgaatggacgcatcgtgggctcc
aagccactttatgtcgctctggcccagagaaaggaggagagaaaggctcacctgaccaac
caatatatgcagtgggtggccgggatgagggcactgcccgccaacgccatcttaaatcag
ttccagcctgcagctgggggctactttgtgccagcagttccacaggctcagggaagacca
ccatattacacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggc
ttccaaggaatgccaagtgctatacgccagtctgggcctcgtccagctcttcgccatctg
gctccaactggtgttcccacagctgtgcagaacttagcgcctcgtgccgctgttgctgct
gctgctcctcgggctgttgcaccttacaaatatgcctccagcgtccgcagtcctcacccg
gccatccagcccctgcaggcaccccagcctgcggtccacgtgcaggggcaggagccactg
accgcctccatgctggctgcagcacccccccaggaacagaagcagatgctgggtgaacgt
ctgttcccactcatccagacgatgcactcgaacctggctgggaagataactgggatgctg
ctggatcgacaactcagagctgctgcacatgctggagtcccccgagtctctccgctccaa
ggtggatgaggctgtggcggtccttcaggctcatcatgccaagaaagaagctgctcagaa
ggtgggcgctgttgctgctgctacctcttag
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