Bubalus bubalis (water buffalo): 102392707
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Entry
102392707 CDS
T05912
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03013
Nucleocytoplasmic transport
bbub03015
mRNA surveillance pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102392707 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
102392707 (DDX39B)
03015 mRNA surveillance pathway
102392707 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102392707 (DDX39B)
03041 Spliceosome [BR:
bbub03041
]
102392707 (DDX39B)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102392707 (DDX39B)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102392707 (DDX39B)
Spliceosome [BR:
bbub03041
]
Complex C
Other components
EJC/TREX
102392707 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102392707 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102392707
NCBI-ProteinID:
XP_025122888
LinkDB
All DBs
Position
2:complement(24683743..24694859)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgtggacaatgagctcttggattatgaagatgatgaggtggagacg
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcttgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatc
ctgggaatggacgtcctatgccaggccaagtcaggcatgggaaagacagcggtgtttgtg
ctggctacactgcagcaactggagccggttactggacaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctccaaatacatg
cccagcgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagccattgctatccaccgtggg
atgccccaagaagagaggctttctcggtatcagcagtttaaagattttcaacgacggatt
ctcgtggctaccaacttgtttggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaggattcagatacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatataagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacacggtag
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integrated database retrieval system
