Bubalus bubalis (water buffalo): 102392857
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Entry
102392857 CDS
T05912
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
bbub04142
Lysosome
bbub04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
102392857 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
102392857 (NPC1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
102392857 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
bbub02000
]
102392857 (NPC1)
Transporters [BR:
bbub02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
102392857 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
102392857
NCBI-ProteinID:
XP_006079245
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All DBs
Position
22:complement(28980488..29024154)
Genome browser
AA seq
1277 aa
AA seq
DB search
MSVRGPALGLLLLLFCPAQVFSQSCIWYGECGIASGDKRYNCRYSGPPKPLPQDGYDLVQ
ELCPGFFFGNVSLCCDVQQLHTLKDNLQLPLQFLSRCPSCFYNLVNLFCELTCSPRQSQF
LNVTATEDYVDPTTNQTKTNVKELQYYVGESFANAMYNACRDVEAPSSNEKALGLLCGRE
ASACNATNWIEYMFNKDNGQAPFTITPVFSDLPTHGMEPMNNATKGCDESVDEVTGPCSC
QDCLAVCGPKPQPPPPPVPWRILGLDAMYVIMWSTYMAFLLVFFGAFFAVWCYRKRYFVS
EFTPIDGNIPFSINASDKGGPTCCDPLGAAFEAHLRRFFEQWGSFCVRHPGCVVFFSVAF
IAACSSGLVFIQVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRTEQLIIRAPHTSPHIY
EPYPSGADVPFGPPLAVDILHQVLDLQTAIESISASYNNETVTLRDICVAPLSPYNQNCT
ILSVLNYFQNSHSVLDHQVGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGP
VFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEREFINFVKNYENPNLT
ISFKAERSIEDELNRESNSDVFTVLISYGVMFLYISLALGHIKSCRRLLVDSKISLGIAG
VLIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETL
DQQVGRVLGEVAPSMFLSSFAETVAFFLGGLSVMPAVHTFSLFAGMAVLIDFLLQITCFV
SLLGLDIKRQEKNQLDVFCCVGGAADDAGVQASENCLFHFFRNSYAPLLLKDWMRPLVVA
VFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVTDYFQSLNQYLHAGPPVYFVLEEGHDYT
STKGQNMVCGGLGCNNDSLVQQVFTAAQLDSYTRIGFAPSSWIDDYFDWVKPQSSCCRIY
NSTEQFCNASVVDPACVRCRPLTPEGKQRPQGADFMRFLPMFLSDNPNPKCGKGGHAAYS
AAVNILDNGTRVGATYFMTYHTVLQTSADFIDAMEKARLIASNITRTMNQQGGDHRVFPY
SVFYVFYEQYLTMIDDTIFNLSVSLGAIFLVAVVLLGCELWSAAIMCATIAMILVNMFGV
MWLWGISLNVVSLVNLVMSCGISVEFCSHITRAFTVSTKGSRVERAEEALSHMGSSVFSG
ITLTKFGGIIVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSINKAKSL
TTQQRYRGTEREQLLNF
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcgcggcccagccctcggcctcctcctgctgctgttctgcccggcgcaggta
ttttcacagtcctgcatttggtatggcgagtgtggaatcgcatctggagataagagatac
aactgcagatattctgggccaccaaagccattgccacaggacggctatgacctagtgcag
gaactctgtccagggttcttctttggcaatgtcagtctttgctgtgatgtccagcagctt
cacacactgaaggacaacctgcagctgcctctgcagtttctgtccagatgtccatcctgt
ttttataacctagtgaacctgttttgtgagctgacatgtagccctcgacaaagtcagttt
ctgaacgttacagcaactgaagattatgttgatcctactacaaaccagacgaaaacaaat
gtaaaagaattacagtactatgttggagagagttttgccaatgccatgtacaatgcctgc
cgggatgtggaggccccctcgagcaacgagaaggccctggggctgctgtgcgggcgcgag
gccagcgcctgcaacgctaccaactggatcgagtacatgttcaacaaggacaatggccag
gcgcccttcaccatcacccccgtcttttcagatcttccgacccatgggatggagcccatg
aacaatgccaccaagggctgtgacgagtcggtggacgaggtcacggggccgtgcagctgc
caggactgcttggccgtctgcggccccaagccccagcccccgccccctcccgttccctgg
agaatcctgggtctcgacgccatgtacgtcatcatgtggagcacctacatggctttcctg
ctcgtgttctttggagcgttctttgctgtgtggtgctacagaaaacggtattttgtctct
gagtttacccccattgatggcaatatacctttctctataaacgccagtgacaaagggggg
ccaacctgctgtgaccctctgggcgccgccttcgaggcccatctgcggcggttcttcgaa
cagtggggctccttctgcgtgaggcaccccggctgtgtcgtgttcttctctgtggccttc
atcgccgcctgttcctcaggcctggtgttcatccaggtcacaaccgacccggtggacctc
tggtcggcccccggcagtcaggcgcgccgggagaaggagtactttgacacgcactttggg
cccttcttccgcaccgagcagctcatcatcagggccccccacacctcgccgcacatatac
gagccctacccctcgggagccgacgtgcccttcgggcctccccttgccgtagacattctg
caccaggtccttgacttacaaaccgccatcgagagcatcagtgcttcttacaacaatgag
actgtgaccctgcgggacatctgcgtggcgcccctctcgccatacaaccagaactgcacc
atcctgagtgtgctgaactacttccagaacagccactccgtgctggaccatcaagtcggg
gatgacttcttcgtgtatgcagattaccacacgcacttcctctactgcgtccgggctcct
gcttccctgaatgacaccagtttgctccacgatccttgcctggggacgtttggtggccca
gtgttcccatggcttgtgcttggaggctacgatgatcaaaactacaataacgccacagcc
cttgtgatcacctttcctgtcaataattactataacgatacagagaagctccagagggcc
caggcctgggaaagagagttcattaattttgtgaaaaactacgagaatccaaatctgacc
atttcttttaaggctgaacgaagcattgaagatgaactaaaccgtgaaagtaacagtgac
gtgttcactgttctgatcagctatggcgtcatgtttttatatatttccttagccttgggg
catatcaaaagctgtcgcaggcttctggtggattcgaaaatctccctgggcattgccggt
gtcctgattgtgttgagctcagtggcctgctccttgggcatcttcagctacatcggggtc
cccctcaccctcattgtgatagaagtcatcccattcctcgtgttggctgtgggggtggac
aacatcttcatcctggtccagacctaccagagagatgaacgtcttcaaggggaaaccctg
gaccaacaggtgggccgggtcctgggagaagtggctcccagcatgttcctctcatccttc
gcagagacagtagcgtttttcttaggaggcctgtccgtgatgccggccgtgcacacgttc
tctctcttcgcgggcatggcagtcctcatcgacttcctcctgcagatcacctgcttcgtg
agcctcctgggtttggacattaagcggcaagagaagaaccagctggacgttttctgctgt
gtcgggggggcggcagacgatgcaggcgtccaggcctccgagaactgcttgttccacttc
ttcagaaactcctacgccccgcttctgctcaaggactggatgcggcccctcgtggtggca
gtatttgtgggtgtgctgtcgttcagtatcgcagtcctgaacaaagtagagatcggattg
gatcagtctctttcaatgccggatgactcctacgtgacggattacttccagtccctgaat
cagtacctgcatgcaggcccacctgtgtacttcgtgctggaggagggccacgactacacg
tccacgaaggggcagaacatggtgtgtggaggcctcggctgcaacaacgactcgctggtg
cagcaggtcttcacggccgcccagctggacagctacacccggataggctttgccccgtca
tcctggattgacgattactttgactgggtcaagcctcaatcatcttgctgtcgcatctac
aacagcacagagcagttctgcaatgcgtcagtggtcgaccctgcctgtgtccgctgccgg
ccgctgactccagagggcaaacagagacctcagggcgcagacttcatgaggttcctgccc
atgttcctctccgacaacccaaaccccaagtgtggcaaagggggacacgctgcctacagc
gcggccgtcaacatcctggacaacggcacgagggtgggagccacgtacttcatgacctac
cacacggtgctgcagacctcagctgacttcatcgatgccatggagaaggcccgcctcatc
gccagcaacatcaccaggaccatgaaccagcaagggggtgatcaccgggtgtttccatac
agcgtgttctacgtcttctatgagcagtacctgaccatgattgacgacaccatcttcaac
ctcagcgtgtccctgggcgccatcttcctggtggccgtggtcctcctgggctgtgagctg
tggtctgcggccatcatgtgcgccaccatcgccatgatcttggtcaacatgtttggtgtc
atgtggctgtggggcatcagcctgaacgtggtttctctggtcaacctggtcatgagctgc
ggcatctccgtggagttctgtagccacatcacaagggcgttcacagtgagcacgaagggc
agccgcgtagagcgggcggaggaggcgctctcccacatgggcagctctgtattcagtgga
atcacactaacgaaatttggaggcattatcgtgttggcttttgccaaatctcaaattttc
cagatattttacttcaggatgtatttagctatggtcttactgggagccactcatggacta
atattcctccctgtcttactcagttacataggcccgtcaataaataaagccaaaagtttg
accacgcagcagcgatacagaggtacagaacgagaacagctcctcaacttctag
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integrated database retrieval system
