Bubalus bubalis (water buffalo): 102392964
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Entry
102392964 CDS
T05912
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X2
KO
K13126
polyadenylate-binding protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102392964 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
102392964 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102392964 (PABPC1L)
03041 Spliceosome [BR:
bbub03041
]
102392964 (PABPC1L)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102392964 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
102392964 (PABPC1L)
Spliceosome [BR:
bbub03041
]
Complex C
Other components
Complex C specific factors
102392964 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_7
RRM_5
SET_assoc
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
102392964
NCBI-ProteinID:
XP_025119200
LinkDB
All DBs
Position
14:complement(10381312..10405585)
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AA seq
618 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSHRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRERE
VELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEK
HEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQAPY
YGSGPPIQPAPRWTAQPPRPSSAYPPGASVVRPAAMSRRPLTPVGSSRQVSTHVPHLVPH
TQRVANIGTQTTGPTVMGCSTPSRPLLTHTYSTPAHRADRVQEPAVHIPGQEPLTASMLA
AAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVEEAL
AVLQAHQATEHMQGVNLR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgatctgcacccg
gacgtgaccgaggccatgctctacgagaagttctcgcccgctggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacgcgccgctcgctgggttacgcctacatcaacttccag
cagcccgcggacgcggagcgggcactggacaccatgaactttgaggtgatcaaaggccag
cccatccgcatcatgtggtcccaccgagacccaggacttcgtaagtcaggtgtgggcaac
atcttcatcaagaacctggaggactccattgataacaaggccttgtacgacaccttctcc
acctttgggaacatcctgtcttgtaaggtggtgtgtgatgagcatggctcccgcggcttc
ggctttgtgcattttgagacccatgaggctgcgcagaatgccatcagcaccatgaacgga
atgctgctgaatgaccgcaaagtcttcgttggccacttcaagtcccgacgggagcgggag
gtggagctgggcgctcgggccatggagttcaccaacatctacgtgaagaacctccacgtg
gacgtggacgagcagcgcctgcaggacctcttctcccagtttgggaagatgctgagtgtc
aaggtgatgagggatgacagcggccactcccgcggctttggctttgtcaacttcgagaag
catgaggaagcccagaaggctgtggtgaacatgaacgggagggaggtgagcgggcggctg
ctctacgtgggccgggcccagaagcgggtggagcggcagaatgagctgaagcgcaggttc
gagcagatgaagcaggaccggctgacccgttaccagggcgtcaacttgtatgtgaagaac
ctggatgactccatagatgatgagaaactgaggaaagagttctctccctatggagtgatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtgtgtttt
tcctctccagaagaggcgaccaaggccgtgacagagatgaatgggcgcatcgtgggcacc
aagccactgtacgtggcactggcccagcgcaaggaagagcggaaggccatcctgaccaac
cagtacatgcagcgcctctccaccatgcgggccctgggcggccccatcctgggctccttc
cagcagcctgccagctacttcctgcccgctgtgccccagcctccagctcaggctccgtac
tatggctctggcccacccatccagcctgcccccaggtggacggctcagccacccagaccg
tcatccgcttacccacccggggcctcggtggtccggccagcagccatgtctcggcgcccc
ttgacccccgttggaagctccaggcaggtctccacccacgtgccacacctggtgccccac
acccagcgagtggccaacattggtacccagaccacaggacccactgtgatgggatgctct
acccctagcaggcctctcctgacacacacatactccacgccagcacaccgcgctgacagg
gtccaggagcccgccgtgcacatccccggacaggagcccctgaccgcgtccatgctggct
gcagcaccgctgcacgagcagaagcagatgatcggtgagcgtctcttcccccttgtctac
aacgtccacgcccacttggccggcaagatcacgggcatgctgctggagattgacaactcg
gagctgctgctcatgctggagtccccagagtccctcaacgccaaggtcgaagaggctctg
gcagtgctgcaggcccaccaggccacggagcacatgcaaggagtgaacctgcgctga
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