Bubalus bubalis (water buffalo): 102393378
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Entry
102393378 CDS
T05912
Symbol
SOX5
Name
(RefSeq) transcription factor SOX-5 isoform X5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102393378 (SOX5)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
102393378 (SOX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
102393378
NCBI-ProteinID:
XP_045021552
EnsemblRapid:
ENSBBUG00015019705
LinkDB
All DBs
Position
4:complement(33262643..34419596)
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AA seq
728 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHEVDGN
KVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTTLGTPERRKGSLADVVDTLKQRKMEELI
KNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQ
LLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQL
PPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGP
LQLQQLYAAQLAAMQVSPGGKLPGVSQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPL
NLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPASLASPSARVSTIGYLNDHDA
VTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEE
GKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKIL
QAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLV
DGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEH
SSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSE
NHIAGQAN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggaa
gaagaggagagtgacgggctcccagcctttcaccttcccttgcatgaagttgatggcaat
aaagttatgtcttcatttgccccacacaactcatctacctcacctcagaaggcagaagaa
ggtgggcgacagagtggcgagtccttgtctagtacaaccctgggaactcctgaaaggcgc
aaaggcagcttagctgatgttgttgacaccttgaaacagaggaaaatggaagagctcatc
aaaaatgagccagaagaaacccccagtattgaaaagctactctcaaaagactggaaagac
aagcttcttgcaatgggatcagggaactttggtgaaataaaagggactcccgaaagccta
gctgagaaggagaggcagctcatgggtatgatcaatcagctaaccagtctgcgagagcag
ctgctggctgcccatgatgagcagaagaaactggctgcgtctcagattgagaaacaacgc
cagcaaatggagctggccaagcagcagcaagaacagatcgcaagacagcagcagcagctt
ctgcagcaacaacacaaaatcaatttgcttcagcagcagatccaggttcaaggtcaactg
ccgccattaatgattcccgtattccctcccgatcaacggacactggctgcagctgcccag
caaggattcctccttcctccaggcttcagctataaggctggatgtagtgacccttaccct
gtacagctgatcccaactaccatggcagctgctgccgcggcaacaccaggcttaggccca
ctccaactgcagcagttatatgctgcccagctagctgcaatgcaggtatctccaggagga
aagctcccaggcgtatcccaaggcaaccttggtgctgctgtatctcctaccagcattcac
acagacaagagcacaaacagcccaccacccaaaagcaaggatgaagtggcacagccactg
aacctatcagctaaacccaagacctctgatggcaaatcacccacatcacccacctctccc
catatgccagctctgagaataaacagtggggcaggccccctcaaagcctctgtcccagca
tcattagctagtccttcagccagagttagcacaataggttatttaaatgaccatgatgct
gtcaccaaggcaatccaagaagctcggcagatgaaggagcagctccggcgggaacagcag
gtgcttgacgggaaggtggctgttgtgaatagtctaggtctcaataactgccggacagaa
aaggaaaaaacaacactggagagtctgactcagcaactggcagtcaaacagaatgaagaa
ggaaaatttagccatgccatgatggatttcaatatgagtggagattctgatggaagtgct
ggagtctcagaatcaagaatttatagagaatccagggggcgtggtagcaatgaaccccac
ataaagcgtccaatgaatgccttcatggtgtgggctaaagatgaacgaaggaaaatcctt
caagcctttcctgacatgcacaactccaacatcagcaagatactgggatctcgctggaaa
gctatgacaaacctagagaaacagccatactacgaggagcaagcccgtctcagcaagcag
cacctggagaagtaccctgactacaagtacaagcccaggccgaagcgcacctgcctggtg
gatggcaaaaagctgcgcattggggaatacaaggcaatcatgcgaaaccggcggcaggaa
atgcggcagtacttcaatgttgggcaacaagcacagatccccatcgccacggctggcgtt
gtgtacccgggagccatcgccatggctgggatgccctcccctcacctgccctcggagcac
tccagcgtgtccagcagcccggagcccggcatgcctgttatccagagcacgtatggtgtg
aaaggagaggagccacacatcaaagaggagatccaggctgaggacatcaacggagaaatt
tatgatgagtacgacgaggaagaggatgatccggatgtagattatgggagtgacagtgaa
aaccatattgccggacaagccaactga
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