Bubalus bubalis (water buffalo): 102393555
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Entry
102393555 CDS
T05912
Symbol
DDX56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bbub03009
]
102393555 (DDX56)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102393555 (DDX56)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Pre-60S particles
Helicases
102393555 (DDX56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
102393555
NCBI-ProteinID:
XP_006051364
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All DBs
Position
8:76393503..76402980
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AA seq
546 aa
AA seq
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MEDPESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
YAIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSA
AEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEEL
KSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
EEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHI
ISQFNQGFYDCVIATDAEVLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAVLNF
DLPPSPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELLSGDSGAPVLLPYQFHM
EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
HPAVVKPHLGNVPDYLVPPALRGLVHPHKKRKKPLASKKAKKAKTQNPLRSFKHRGEKCR
PTAAPS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggaggatccggaatcgttgggcttcgaacacatgggcctggaccaccggctcctacag
gccgtcactgatctgggctggtcgcgacccacgttgatccaggagaaggccatcccgctg
gcgctggaggggaaggacctcctggctcgcgcccgcaccggttccgggaagaccgccgct
tatgccattcctatgctacagctgctgctccacaggaaggcgacaggccctgtggtggag
caggctgtgagagcccttgtccttgtgccgactaaggagctggcaaggcaggcccaatcc
atgattcagcaactggctgcctactgtgctcgagacatccgggtggccaacgtctcagcc
gctgaagactcagcctctcagagagctgtgctgatggagaagcccgatgtggtggtgggg
actccatcccgcatattaaaccacttgcagcaagacaacttgaagcttcgagactccatg
gagctgctggtggtcgatgaggctgatcttcttttctcctttggctttgaggaggaactt
aagagtcttctctgtcacttgccccggatttaccaggcttttctgatgtcagctactttt
aatgaggatgtgcaagcacttaaggagctggtactacataacccggttaccctcaagtta
caggagtcccagctaccagggccagaccagttacagcagtttcaggtggtctgtgagact
gaggaagacaaatttctgttgctgtatgccctgctcaagctgtcgttgattcggggaaag
tctctgctctttgtcaacactctggagcggagttaccggctgcgcctattcctggagcaa
ttcagcatccccgcctgtgtgctcaatggagagcttccactacgctccaggtgccacatc
atctcgcagttcaaccaaggcttctacgactgcgtcatagcaacagatgctgaagtcctg
gggcctccagtcaagggcaagcatcggggcaaaggacccaagcgggacaaggcttctgat
ccggaggcaggcgtggcgcggggcatagacttccaccacgtatgtgctgtgctcaacttt
gatctccccccctcccccgaggcctacatacacagggctggcaggacggcacgtgccaac
aaccccggcatagtcttgaccttcgtgctgcccacagagcagtctcagctgggcaagatt
gaggagcttctcagtggagacagtggggcccctgtcctgcttccttaccagttccacatg
gaggagatcgagggcttccgctaccgctgcagggatgccatgcgctcagtgactaaacaa
gccatccgtgaggcaaggctgaaggagatcaaagaggagctcctgcactcagagaagctc
aaaacatactttgaagacaatccgagggacctccaattgctgcggcacgacctgccctta
caccccgctgtggtaaagcctcacctgggcaacgtccctgactacctggttcctcctgct
ctgcgcggcctcgtccaccctcacaagaagcggaagaagcccctcgcctctaagaaggcc
aagaaggcaaagacacagaacccactgcgaagcttcaagcacagaggagagaaatgcaga
cccacagcagcaccctcctga
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