Bubalus bubalis (water buffalo): 102393697
Help
Entry
102393697 CDS
T05912
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1
KO
K12857
Prp8 binding protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102393697 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102393697 (SNRNP40)
Spliceosome [BR:
bbub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102393697 (SNRNP40)
Complex C
U5 SnRNP specific factors
102393697 (SNRNP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
WDR54
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
102393697
NCBI-ProteinID:
XP_025134345
LinkDB
All DBs
Position
2:174387233..174412933
Genome browser
AA seq
388 aa
AA seq
DB search
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADSSRSSIFMMFAGSSTSGIPQAGGFCISYRATLAPSMKWLSTPMNPSFSQHPVT
RDYIWGRFSEDMEWKTPQDCLTLRPQTA
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagcagaagcgtaagggcccagagttgccactggtcccagtcaagcggcag
cgacatgaactactgttgggagcggcagggtcgggccctggagccgggcagcagcaggcg
gcgccgggagctttgctgcaagcgggtcctccaagatgttcctcccttcaagccccaatc
atgcttctctcgggacatgaaggggaagtgtactgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatattgttgtggaatgtctatggagactgt
gataactacgctacattgaagggacacagtggagcagtgatggagcttcattataacaca
gacggcagtatgctcttctcagcatccacagataaaactgtggcggtgtgggatagtgaa
acaggcgagagggttaaaagactgaaggggcatacttcgtttgtgaactcctgttaccca
gccaggaggggcccccagcttgtttgcactggcagtgacgacggtacagtcaagctttgg
gatatccgcaagaaagcggccatccagacatttcagaacacctaccaagttttagctgtg
actttcaatgatacaagtgatcagattatttctggtggaatagacaatgatatcaaggtc
tgggacctgcgccaaaataagctgacctacacgatgagaggtcatgcagattcagtgact
ggcctgagtttaagttctgaaggctcttatctcttgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcccaaagagcggtgtgtgaagatatttcaagga
aatgtgcacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagctgacagttccagaagttccatcttcatgatgtttgcaggttcg
tctacgtctgggataccacaagcaggaggattttgtataagctaccgggccacgctggct
ccatcaatgaagtggctttccaccccgatgaacccatcattctctcagcatccagtgaca
agagactatatatgggggagattcagtgaagatatggaatggaagactccacaagactgc
ttgaccctgagacctcagacagcataa
DBGET
integrated database retrieval system
