Bubalus bubalis (water buffalo): 102393741
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Entry
102393741 CDS
T05912
Name
(RefSeq) collagen alpha-6(VI) chain isoform X2
KO
K06238
collagen type VI alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04820
Cytoskeleton in muscle cells
bbub04974
Protein digestion and absorption
bbub05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102393741
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102393741
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102393741
09142 Cell motility
04820 Cytoskeleton in muscle cells
102393741
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102393741
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102393741
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbub04147
]
102393741
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102393741
Exosome [BR:
bbub04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102393741
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102393741
Hyaluronan
Extracellular matrix or blood plasma proteins
102393741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
Radical_SAM
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
102393741
NCBI-ProteinID:
XP_006043498
LinkDB
All DBs
Position
1:complement(196415490..196586670)
Genome browser
AA seq
2266 aa
AA seq
DB search
MKMLLILFLIIICSHVSVNQHSGPEYADVVFLVDSSDHLGIKSFPFVKAFINKMISSLPI
EADKYHVGLAQYSDGLHREFLLSTFKSRGPMLNHLKKNFGFLGGSLQVGKALQEVHRAYF
SSGRDRKQFPPILVVLASGESEDAVEEAAEALRKDGVRIVSVGMQGVSEKTLKAMATGQF
HYNLRTVRDLSTFSQNMTQILKDAAQYKDGAVNDVLVEVCQGPSVADVVFLLDMSTNSSW
EDFDYLKEFLEESISALDIKEYCMRVGLVAYSNETKVISTLSRGVNKSEVLQDIQSLAPQ
AGKAYTGAALRKIRKEVFSAQHGSRKNQGVPQIAVLVTHSPSQDNVTKAAVNLRRQGVTI
FTIGVEGASNTQLEKIASHPAEQYVSQLRSFSDLAAHNQTFLKKLRNQITHTVSVISERT
ETLKAGCVDTEEADIYLLIDGSGSTQATDFQEMKTFLSEVAGMFNIAPQKVRVGAVQYAD
RWDLEFEISKYTNKHDVGKAIENIRQMGGNRNTGAALNFTLGLLQKAKQQRGGRVPCHLV
VLTNGASRDSVLGPANRLSEELVHVYAIGVREANQTQLREIAGEEKRVYYVHDFDALKDI
RNQVVQEICAEEACKEMKADIMFLVDSSGSIGLENFIKMKTFMKNLVSKSQIRADRVQIG
VVQFSGTNKEEFQLNRYTSQEEISDAIDRMAHIGETTLTGSALTFVSQYFSPAKGARPNV
RKFLILITDGEAQDIVKDPAVALREEGIIIYSVGVFGSNVTQLEEISGRPEMVFYVENFD
ILKHIEDDLLFGICSPREECKRIEVLDVVFVIDSSGSIDHDEYSIMKDFMIDLVKKADVG
KNHVRFGALKYADDPEVLFYLDNLDTKWEVISVLQNDQPMGGNTYTAEALGFSDHMFTEA
RGSRLHKGVPQVLIVITDGESHDADKLNATAKALRDKGVLVLAVGIAGANPVELLAMAGS
SDKYFFVETFGGLKGIFSDVSASVCNSSKVDCEIEKVDLVFLMDGSNSIHPDDFRKMKEF
LASVIQDFDISNNRVRIGAAQFSHTYQPEFPLGMFISKKEISFQIENIKQIFGYTHIGAA
LRQVGHYFRPDMGSRIHAGTPQVLLVLTDGQSQDEVARAAEELRHKGIDIYSVGIGDVDD
QQLVQITGTANKKLTVHNFDELKKVKKRIVRNICSPRGDSNCFVDVVVGFDISTQQNGQT
LLEGQSWMETYLQDILRVISSLNGVSCEVGTETQVSVAFQVTNAAEKYSPKFEIYSENIL
NSLKDLTVKGPSLLNANHLSSLWDAFQNKSAARGKVALLFSDGLDDDVEKLERKSDELRK
EGLNALITVALDGPTSSSDLADLLYIEFGKGFEYRTQLTLGTRDLGSQLSKYLVNVAERT
CCCLFCKCIGGDGTRGDPGPAGKTGLPGFKGSEGYLGEEGTAGERGASGPVGEQGTKGCY
GTKGPKGNRGLNGQEGEAGESGIDGLNGEQGDSGLPGTKGEKGNEGAQGIPGERGISGDH
GAKGLRGDPGVPGFDNSIEGPKGLKGELGRQGRRGQPGPPGTPGSRRKTAAHGQRGHTGP
QGKPGIPGPDGLAGSLGLKGPQGPRGEAGVKGEKGNLGSKGPQGLPGPAGEAGSQGRLGS
QGNKGEPGDLGIKGAIGLRGPRGLPGDDGNPGYGSVGSRGAKGQEGFPGEIGPKGEVGDP
GGPGQNGPKGARGKTVSAGLPGEPGSPGELGPPGRKGVKGAKGLASFSTCELIQYVRDHS
RAPQCPVYPTELVFVLDQSRSVTEPEFVRMKAMLSSLLSGLRVREDHCPAGARVAVLAYD
SHARLLIRFSDTYRKDRLLREIEALPYERSTASRDIGKAMRFVSRHVFKRMLPGSHARRI
ATFFSGGPSVDPQTITTAGLEFSALDIIPVVIAFNQVPAVRRSFAIDDTGRFQVIIIPSG
ADSAPALEGLQRCTFCYDVCKPDASCDQARPPPVQSYVDAAFLLDGSRHVGSAEFEDIQG
FLGALLDHFEITPEPETSVTGDRVALLSLSPPHFLPNTQRSPVRSEFNLTTYKSKRLMKR
HVEESVQQPNGDAFIGHALQWTLDNVFSRTPNLRRNKVIFVVSAGETSHLDRETLKKESL
RAKCQGYTLFVFSLGPSWNDQELEDLASYPLDHHLVQLGRIHKPDHRYAVKFVKAFISSV
RRAINKYPPINIKAKCNRLSSTEPQQPPLQFVRSFVPGPHRATLKEAALQKVKFFQYKNY
FSRIARGGRDGTVQNFTRNILHVFENGKRVIKAAPKQHDKRSAHRV
NT seq
6801 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgctgctcattttgttccttataataatttgttcccatgtttctgtcaaccaa
cattctggccctgagtatgctgatgtggtgtttctggtggacagctccgaccacctggga
attaagtccttcccgtttgtgaaggccttcatcaacaagatgatcagcagcctccccata
gaggctgacaagtaccacgtgggcctggcccagtacagcgatgggctccacagagagttc
ctgctcagcaccttcaagagcaggggccccatgctgaaccacctcaagaagaacttcggg
ttcctggggggctccctgcaggttgggaaggctctccaggaggtgcacagggcctacttc
tcaagcgggagggacaggaaacagtttcccccgatcctggtggtcctggcttccggcgag
tctgaagatgctgtggaagaggccgccgaagcactgcgcaaagatggggtgaggatcgtc
tccgtggggatgcagggcgtgtctgagaagaccctgaaggccatggccacgggccagttc
cactacaacctccggactgtcagggacctcagcacgttctcccaaaacatgacgcagatt
ctcaaggatgcagctcagtacaaggacggggcagtcaatgacgtccttgtggaagtttgc
caaggcccttctgtggctgacgttgtgttcctgttggatatgtccaccaacagcagctgg
gaggactttgactatcttaaagaattcctggaagaaagcatatctgctctggacatcaag
gagtactgcatgagggttggcctcgtggcctacagcaacgagacaaaggtgattagcacg
ctgagcaggggcgtaaacaagtcggaggttctgcaggacatccagagccttgctccccag
gctggaaaggcctacactggagccgccttgaggaagatcaggaaggaagtcttcagcgca
cagcacggcagtcggaagaaccagggggtgccgcagatcgccgtgctcgtgacccacagc
ccatcccaggacaacgtgaccaaggccgccgtgaacctccggcgccagggggtgaccatc
ttcaccatcggcgtagagggggccagcaacacccagctggagaagatcgcgtctcacccc
gctgagcagtacgtgtcccagctgaggtccttctctgacctggctgcccacaaccagacg
tttctgaagaagctgcggaatcagatcacacacacggtctctgtcatttccgaaaggacc
gaaaccctcaaagccggttgtgtggacacggaggaagcagacatctacctgctcattgat
ggctccgggagcacccaggccacagacttccaggagatgaagaccttcctgtcagaggtc
gcagggatgttcaacatcgctccccagaaggtgcgggttggggctgtccagtacgccgac
cgctgggacttggaatttgagatcagtaaatacacgaacaagcatgacgtcggaaaggcc
atcgagaacatcaggcagatgggcgggaacaggaacacgggcgccgccttgaacttcact
ctggggctgctgcagaaggcaaagcagcagcggggaggcagagtgccctgccacctcgtt
gtgctgaccaacggtgcgtccagggacagcgtcttggggcctgcaaatagactgagcgag
gagctcgtccacgtctatgccattggggtcagggaggctaaccagactcagctgcgtgaa
attgctggcgaggagaaacgggtctactacgtgcatgactttgatgccttgaaagacata
agaaaccaggttgttcaagagatctgtgctgaagaagcctgcaaagagatgaaggccgac
atcatgttcctggtggacagttctggcagtataggactagagaacttcatcaaaatgaaa
acatttatgaagaacctggtgagcaaatctcagatcagggcagatcgagtgcaaatcggt
gtggtccagttcagcggcaccaataaggaagagtttcagctcaacagatacacatcccag
gaggaaatttcagatgcaatagaccgaatggctcacattggagaaaccaccttgacgggt
agcgccctgacctttgtgtctcagtacttcagccctgccaagggagcccggcccaacgtc
aggaaattcctcatcctcatcacggatggtgaggctcaggacatagtcaaggacccagca
gtggcacttcgggaagaaggcatcattatctactctgtaggggtgtttggctccaacgtc
acccagctggaggagatcagcgggaggccagagatggttttttatgttgagaattttgac
attctgaagcacattgaggatgaccttttgtttggaatatgcagcccccgtgaagaatgc
aagcgcattgaagttttagacgtcgtgtttgtcatcgacagctctggcagcattgaccat
gatgaatacagtatcatgaaggactttatgatcgacttggtgaaaaaagctgatgtgggc
aagaatcacgtccggtttggggctctgaagtacgcggatgacccggaggtgctattttat
ctggataaccttgacaccaaatgggaggtgatctcggtgctccagaatgaccagcccatg
gggggcaacacttacaccgctgaggccctgggcttctcagaccacatgttcaccgaagcc
cggggcagccgtctgcacaaaggggtcccgcaggtcctcatcgtgatcaccgatggggaa
tcccacgatgccgataagctcaacgctacagccaaggccttgcgggacaagggcgtcctt
gtcctggccgtgggcatcgccggtgccaaccctgtggagctgctggccatggcaggatcg
agtgacaagtacttcttcgtggaaacttttggaggtctgaaggggattttttcagatgtg
tctgccagcgtatgtaactcttcaaaagtagactgtgaaattgaaaaagtcgatctcgtg
ttcctcatggatggttcaaatagcattcatccagatgacttcaggaagatgaaggaattc
ttggcatctgtcattcaagactttgatatcagtaacaacagagtgcgtataggagctgcc
caattcagccacacttaccagccggagttccccctgggaatgttcatcagcaagaaggag
atctcatttcagattgaaaacatcaagcagatctttggatacacccacatcggtgccgcc
ctccggcaggtggggcactacttccggccagacatgggcagccggatccacgcaggtacc
ccccaggtgctgctggtcctcacggacggccagtcccaagacgaggtggctcgggccgcc
gaagagctgagacacaaaggcatcgacatttactccgtgggcattggggatgtggatgac
cagcagctcgttcagatcaccgggaccgccaacaagaagctgacagttcacaactttgac
gaactgaagaaggtcaagaagaggattgttcgtaacatctgttccccccggggcgacagc
aattgctttgtggacgttgtggtgggatttgacatctcaactcagcagaatgggcagact
ttgcttgaaggccagtcctggatggaaacctatcttcaagacatcttacgtgtcatcagc
tccctcaatggggtaagctgtgaggtgggcacagagactcaggttagtgtggcttttcaa
gtgaccaatgctgcagaaaaatattcccccaagtttgagatctacagtgaaaacatcctg
aacagcttaaaggatttaacagttaaaggaccatctcttctcaatgcaaaccacttgagt
tctctgtgggatgcatttcagaataagtcggctgctcggggaaaggtggccctcttattt
tcagatggattggatgatgatgttgaaaaacttgaacgaaaatctgatgaacttagaaaa
gaaggcctgaatgccctcatcactgttgctctggatggacccaccagttccagcgacctg
gctgatcttctgtacattgaatttgggaaaggatttgagtacaggacgcagctcactctt
gggacgagggatcttgggagccaattgtcaaagtacctggtcaatgttgcggaaaggacg
tgctgctgtttattctgcaagtgcattggaggagatggcacaaggggagaccctggacca
gcagggaaaacgggacttccaggttttaaaggcagtgaaggctacctgggagaggagggc
actgctggagaaagaggagccagtggacctgtgggagaacaaggtactaaaggatgctat
ggtaccaagggccctaagggaaacaggggactaaatggacaggagggagaagctggggaa
agtggaattgatggcttaaatggagaacagggtgacagtggtcttcctggaacaaaagga
gagaaaggcaatgaaggagcccagggaatcccgggagagagaggaatttctggggaccat
ggagcaaagggcttgcgtggagacccaggagttcctggatttgacaatagcatagaggga
cccaagggcttgaaaggagaacttggaagacaggggagaagaggccagccagggccccct
ggaactcccggctccagaaggaagacagcagctcatggccagaggggacatacaggccca
caggggaaaccaggcatcccaggtccagatggacttgcagggtcactgggacttaagggc
cctcagggtccaagaggagaagctggtgtgaaaggagaaaaaggaaatctgggaagtaaa
ggtccccaggggcttccaggaccagcaggagaggcagggagtcaaggccgtttgggaagc
caaggaaataaaggagaacctggcgatctggggataaagggagccattggccttcggggt
cctcgaggcttgccgggtgatgatggcaacccaggttatgggagtgttggaagtagagga
gcaaaggggcaagaaggattccctggagaaatcggacctaagggtgaggtcggggaccct
ggtggcccaggacaaaatggacccaagggcgctagaggcaagacggtatctgctgggctt
cccggagaaccaggatcccctggggagctgggacctcctggacgcaagggtgtgaaaggg
gccaaaggattggcttcgttttctacatgtgagctcatccagtatgtgcgggaccatagt
cgagcgcctcagtgccccgtgtaccccacggagctggtgttcgtgctggaccagtcccgg
agcgtcacagagcccgagtttgtgcggatgaaggcgatgctgtcctccctgctgagcggc
ctccgggtccgggaggaccactgcccggcaggcgcgcgcgtggccgtgctggcctatgac
tcccacgccaggctcctcatccgcttctccgacacgtacaggaaggaccgactcctccga
gagatcgaggccctcccttacgagcgctccacggccagcagggacatcggcaaggccatg
aggtttgtctccaggcatgtcttcaagcggatgctcccagggtctcacgccagaagaatc
gccaccttcttcagtggcggcccgtccgtggacccccagaccatcaccactgctggcctg
gagttcagcgccctggacatcatcccggtggtcatcgccttcaatcaggtgcctgccgtc
cggcgatcatttgcgattgacgacacaggcagattccaagtcatcatcatcccatccgga
gctgactctgcaccagcactcgagggactccagcggtgtactttctgctacgatgtatgc
aagccggacgcttcttgcgatcaagccagaccaccccctgtgcaatcttacgtggatgct
gctttccttctggacggctcccggcatgtgggaagcgcagaatttgaagacatacaagga
ttcttgggggcactgttagatcacttcgaaatcaccccagagcccgagacctctgtcacc
ggagaccgggtggccctattaagcctcagtccccctcacttcctacccaacactcagagg
agccctgttagaagcgaattcaacctgaccacctacaagagcaaacgcctcatgaagaga
cacgtggaagaatctgttcagcagccaaatggagatgcttttattggtcacgccctccag
tggactctggacaatgtcttctcaaggacacccaatctgagaaggaataaagtcattttt
gtggtatctgctggggaaaccagtcacttggacagggaaaccttaaagaaagaatccttg
agggccaagtgtcaaggttataccctgttcgtgttttcccttgggccttcttggaatgac
caggaactggaagatctagccagctaccctttggatcaccacttggtccagcttggccgc
attcataagcctgaccacagatacgctgtgaagtttgtgaaggcttttataagctcagtc
aggcgtgcaatcaacaaatatccaccaataaatatcaaagcaaagtgcaacagactcagc
tctacggagccgcagcagcccccactccagtttgtgcgaagctttgttcctgggccacac
agagctaccctcaaagaagctgcattgcagaaggtgaagttctttcaatacaaaaattac
ttttcaagaatagcaagaggcggcagagatggtactgttcaaaattttaccagaaacata
ctccatgtctttgaaaatggaaaaagggtgataaaagcagctcccaaacaacatgataaa
cgaagcgctcacagagtgtaa
DBGET
integrated database retrieval system
