Bubalus bubalis (water buffalo): 102393964
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Entry
102393964 CDS
T05912
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X4
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03082
ATP-dependent chromatin remodeling
bbub04714
Thermogenesis
bbub05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102393964 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102393964 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102393964 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102393964 (SMARCA2)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102393964 (SMARCA2)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102393964 (SMARCA2)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
102393964 (SMARCA2)
Chromatin remodeling factors
BAF complex
102393964 (SMARCA2)
PBAF complex
102393964 (SMARCA2)
GBAF(ncBAF) complex
102393964 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
102393964
NCBI-ProteinID:
XP_025137357
LinkDB
All DBs
Position
3:complement(104892044..105072781)
Genome browser
AA seq
1554 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPSM
GSADFPQEGMHQMHKPMDGMHDKGVEDIHCGSMKGTAMRPPHPGMGPPQSPMDQHSQGYM
SPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGPLIPGDPQAMNQPNRGPSPFSPVQLHQ
LRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQPPPQPQPQPQPQQPQPQQQALVN
YNRPSGPGPELSGPSPPQKLPVPAPSGRPSPAPPAAAPPPAAAVPGPSVPQPAPGQPSPI
LQLQQKQSRISPVQKPQGLDPVEIMQEREYRLQARIAHRIQELENLPGSLPPDLRTKATV
ELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKI
EQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERI
EKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKK
RRRKKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLD
AWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQII
ETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSL
YNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPS
VVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKN
HHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFA
MTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILY
RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNG
VINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDG
TTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD
RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQ
AILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEED
ELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEME
EEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYK
DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH
NAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVK
VKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDENEQSEASGTDDE
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacagaccctggcgcgatgccccacccggggccttcgccagggccggga
ccctctcctggacccattcttgggcccagtccgggacctggaccatcccctggttccgtc
cacagtatgatggggccaagtccggggcctcctagtgtctcacaccctatgccgtcgatg
gggtctgctgacttccctcaggaaggcatgcatcagatgcacaagcccatggatggtatg
cacgacaagggggttgaagatatccattgtggatccatgaaaggcactgctatgcgacca
cctcacccaggaatgggccctcctcagagtccgatggatcagcacagccaaggttacatg
tcaccgcacccgtctccgctgggagccccagagcatgtgtccagccctatatcaggaggc
ggcccgaccccaccacagatgccaccgagccagccaggacccctcatcccaggcgaccct
caggcgatgaaccaacccaacaggggtccctctcctttcagtcccgtccagctgcatcag
ctccgagcccagattttagcttacaagatgctggcccggggccagcccctccccgaaaca
ctgcagcttgcagtccaggggaaaaggacgttgcctggcatgcagcaacagccgccgcca
cagccccaaccccagcctcagccgcagcagccgcagccgcagcagcaggcccttgttaac
tacaacagaccatctggcccggggccagagctgagcggcccgagccccccgcagaagctg
ccggtgcccgctcccagcggccggccctcacctgcgcctcccgccgcagcgccaccgccc
gcggctgccgtgcccggaccctccgtaccgcagccggccccggggcagccctcacccatc
ctgcagctgcagcagaagcagagccggatcagccctgtccagaaaccgcaaggcctggac
cccgtggagattatgcaggagcgggagtacagacttcaggctcgcatagcccataggata
caggagctggaaaatctgcctggctctttgccaccagacttacgaaccaaagcaaccgtg
gaactgaaagcacttcggttactcaatttccaacgtcagctgcgacaggaggtggtggcc
tgcatgcgacgggacacgaccctggagacggccctcaactccaaagcgtacaagcggagc
aagcgccagaccctgagggaagcccgcatgacggagaagctggagaagcagcagaagatt
gagcaggagcggaagcgaaggcagaagcaccaggaatacctgaacagtattttgcaacat
gcaaaagactttaaggagtatcatcggtctgtggctggcaagatccagaagctttccaaa
gcagtggccacctggcatgccaacaccgaaagggagcagaagaaagagacggagcggatt
gagaaggagagaatgcggaggctgatggctgaagatgaagagggctatagaaaactgatc
gatcaaaagaaagacaggcgtttagcatacctcttgcagcagactgatgagtatgtggcc
aacctgactaacctggtttgggagcacaagcaagcccaggcggccaaagagaagaagaag
aggaggaggaagaagaagaaggctgaagagaacgcagaaggaggggagtctgccctggga
ccagatggagaacccatagatgagagcagccagatgagtgacctccccgtcaaagtgact
cacacagaaactggcaaggtcctgtttggcccagaagcacccaaagcaagtcagctggat
gcctggttggaaatgaatcctggttacgaagttgcccctagatcggacagtgaagagagt
gattctgattatgaggaggaggatgaggaggaagagtccagcaggcaggaaactgaagag
aaaatacttctggatccaaacagcgaggaggtttcggagaaggatgccaagcagatcatc
gagacagctaagcaggatgtggacgacgagtacagcatgcagtacagtgcccgaggctcc
cagtcctactataccgtggcccacgccatctctgagagggtggagaagcagtcggccctc
ctcattaatggaaccctgaagcattatcagctccagggcctggaatggatggtttctctg
tataataacaatttgaacggaatcttagctgatgaaatggggctgggaaagaccatacag
accattgcactcatcacttatctgatggagcacaaacgactcaatggcccctatctcatc
attgttcccctttcgactctatctaactggacgtatgaatttgacaaatgggctccttct
gtggtgaagatttcttacaagggcacccctgccatgcgtcgctctcttgtcccccagcta
cggagtggcaaattcaacgtcctcctgactacttatgagtacatcataaaagacaagcac
attcttgcaaagatccggtggaaatacatgatagtggacgaaggccaccgcatgaagaat
caccactgcaagctgacgcaggtcctcaacacgcactacgtggcccccagaaggatcctc
ctgaccgggaccccactgcagaataagctcccggaactctgggccctcctcaacttcctc
ctccccaccatttttaagagctgcagcacatttgagcagtggtttaatgcaccgtttgcc
atgactggagagagggtggacttaaatgaagaagaaactatattgatcatcagacgtctg
cataaggtgttgagacccttcttactgaggagactgaagaaagaagttgaatctcagctt
ccagaaaaggttgagtatgtgatcaaatgtgacatgtcagctctgcagaagattctgtat
cgccacatgcaagccaaagggatcctcctcacagatggttcagagaaagataagaagggg
aaaggaggtgctaagacactaatgaacaccatcatgcagttgagaaagatctgcaatcac
ccatatatgtttcagcacattgaggaatcttttgctgaacacctgggctattcaaatggg
gtcatcaatggggctgagctgtatcgggcctcgggaaagtttgagctacttgatcgtatt
ctgccaaaattgagagcgactaaccaccgcgtgctgcttttctgccagatgacgtccctc
atgaccatcatggaggattactttgcttttcggaacttcctttacctgcgccttgatggt
accaccaagtctgaagatcgtgctgctttgctaaagaaattcaatgaacctgggtcccag
tatttcattttcttgctgagcacaagagctggaggcctgggcttgaatctccaggccgct
gatactgtggtcatcttcgacagcgactggaatcctcatcaggacttgcaggcgcaggac
cgcgctcaccgcattggccagcaaaacgaggtccgtgtgctgagactctgcaccgtcaac
agcgtggaagagaagatcctcgccgccgccaagtacaagctgaatgtggatcagaaggtg
atccaggcgggcatgtttgatcagaagtcttccagccatgagcggagggccttcctgcag
gccatactggagcacgaagaggaaaatgaggaagaagatgaagtgcccgacgacgagact
ctgaaccaaatgattgctcgacgagaggaggaatttgatctttttatgcgcatggacatg
gaccggcggagagaggatgcccggaacccgaaacgcaagccccgcctgatggaggaagac
gagctgccctcgtggattattaaagatgacgccgaggtggaacggctgacgtgtgaagag
gaggaggagaagatctttgggagggggtctcgccagcggcgggatgtggactacagcgat
gccctcacggagaaacagtggctgagggccattgaagacggcaatttggaagaaatggaa
gaggaagtccggcttaagaagcgaaaaagacgaagaaacgtggataaagatcctgcaaaa
gaagatgtggagaaggccaagaagaggagaggtcgccctccagctgagaagctgtcacca
aatccccctaaactgacgaagcagatgaatgctatcatcgacacggtgataaactacaaa
gacagttcagggcgacagctcagtgaagtcttcattcagttaccttcaagaaaagaatta
ccagaatattatgaattaattaggaaaccggtggatttcaaaaaaataaaggaaagaatt
cgtaatcataagtaccggagcctgggtgacctggagaaagacgtcatgctcctctgtcac
aatgctcagacattcaacttggagggatcccagatctatgaagactccatcgtcttacag
tcagtgtttaagagcgctcggcagaaaattgccaaagaggaagagagtgaggacgaaagc
aatgaagaggaggaagaagaagatgaagaagagtcggagtcagaggcaaaatctgttaag
gtgaaaatcaagctcaataaaaaggatgagaaaggccgggacaaaggaaaaggcaagaaa
aggccaaaccgaggaaaagccaagcccgtggtgagcgattttgacagcgatgaagagcag
gatgagaatgaacaatctgaagccagtgggactgatgatgagtga
DBGET
integrated database retrieval system
