Bubalus bubalis (water buffalo): 102394387
Help
Entry
102394387 CDS
T05912
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain isoform X3
KO
K06238
collagen type VI alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04820
Cytoskeleton in muscle cells
bbub04974
Protein digestion and absorption
bbub05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102394387 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102394387 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102394387 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102394387 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102394387 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102394387 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbub04147
]
102394387 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102394387 (COL6A5)
Exosome [BR:
bbub04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102394387 (COL6A5)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102394387 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
102394387 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
vWA_SIBA-E
Copine
LpxI_N
Motif
Other DBs
NCBI-GeneID:
102394387
NCBI-ProteinID:
XP_044804472
LinkDB
All DBs
Position
1:complement(196623578..196784964)
Genome browser
AA seq
2263 aa
AA seq
DB search
MKILLIIFVPLFWTKTLSYQSPGPGPEYADVVFLVDSSDHLGIKSFPFVKTFINKMISSL
PIEADKYHVGLAQYSDGLHREFLLSTFKSRGPMLNHLKKNFGFLGGSLRIGNALQEVHRA
YFSSGRDRKQFPPILVVLASGESEDAVEEAAEALRKDGVRIVSVGMQRASEKTLKAMATG
QFHYHLRMVRDLSTFSQNMTQILKDATQYKDETAYSDIEVPFPRACKKDSIADLMFLVDE
AVGTTENLRLLQNFLKNITSSMDVQDNCLRLGLMSYSDRVKTVSLLSLSTTQSEFQEQIQ
KLSLRAGKSSAGAAIDQLRRKGFSASHGSRRAQGVPQIAVLVTDRPSDDSVREVAFDLRL
QDVTVLALGIEGANKTQLEEIVSYPPEQTISMLQSYADLDNYSKKFLKKLQNEIWSQVSA
RAEQMELDKTGCVDTKEADLYFLIDGSSSIQKKHFEQIKEFMLAVIRMFSIGPDKVRVGA
VQYSHKTKVEFDISDYLNDVKLRKAVYNIKQLRGRTHTGAALDFMLPLMKEGRKQRMNEV
PCHLIVLTDGISGDAVLEPAERLRAENITIHAIGIGKANRTQLQQIAREEERVNFGQNFD
ALKSIKNEVVRSICTEKGCESMKADIMFLVDSSGSIGPENFEKMKTFMKNLLDKIQIGED
KSRVGVVQFSHYSKEEFQLDKYFTQKEISDAIDGMSPISDNTLTGSAITFVDPYFTESKG
GRSMVKKFLILITDGEAQDDVRDPAKALRDKGVVIFSVGVYGANRTQLEEISGDGGLIFH
IENFDDLKAIESKLIFRMCALHDCKRIQQLDVVFVLDHSGSINPEDQENMINLTIHLVKK
SDVGLDRVRFGALRYSDDPEVLFYLNKYSSKPAIIEHLRRRRDTAGRTYTAKALERANDM
FTEEHGSRIKQNVRQMLIIITDGVSHDRNKLGEAASKLRTKGVIVYAVGVGAADQMELET
MAGDKNYTIHVSGFDKLKDIYLPVQDSMCNNSQEACDIQEADVIFFCDGSDMVSDSDFVT
VTTFLSDLIDNFDMPSERMKIGMAQFGSRYQEIIELQNSLTKTEWKSRIQAITKSKGLPR
IDLALRKVGIMFEPSAGGRRNAGVPQTLVVITSGGPRYDVSKAVEALREAGICILALGIG
DVYKEQLLPITGSSEKIITFQDFDKLKNVAVQKRMVREICKSCGKTNCFMDMVVGFDIST
HLPGQPLFHGHPQLQSYLPSILEDITSMRGVSCGAGAEMQVSVAFKVNSDQDVPAKFQIY
QQTIFDSLLQVTVNGPTHLNAQFLQSMWDTFENVSTSQGQVLLIFSDGLGRESKMMLEDQ
SDRLREAGLDALLVVSLNETAHDEFSSFEFGKGFDYRTHLTIGMKELSSMLSQYLGNIAE
RTCCCQFCKCPGIPGPQGIRGPQGSQGSPGVKGSRGHRGEEGEPGTRGEIGPQGNKGNAG
CPGQPGEKGTRGFSGYKGEHGDDGIDGLDGEEGFHGIPGKKGEKGDPGSQGSPGSRGPPG
GYGEKGFPGDPGNPGQSSNIKGQKGSKGEQGSQGRTGQKGTQGSPSSRGSRGREGQRGVQ
GALGEPGTPGPQGASGAEGLQGSQGASGPPGSKGEKGSEGRKGPQGAPGPVGDKGSVGRP
GPLGKKGEPGIPGDPGPAGQVGQRGKQGDYGIPGYGPMGQKGVKGPRGFLGDMGQKGDAG
DPGIPGGPGPKGFRGLTLMVGQKGEAGSPGPQGPPGRRGPKGMAGKPIYSQCDLIQFTRD
HSPCWKEKCPVYPTELVFALDQSNDITEQRFNETRDIITSIVNDLHIRESNCPVGARVVV
VSYNSGTGYLIRGSDYHSKKQLLQLLSQMKYQSSGEVRDIGNAMRFVARNIFKRTPAGAN
VQRVAVFFSNGQAASRSSIITATMEFSALGISPAVFAFNEKVYLDEAFGFDDTGTFQVLS
VPPNGEYDPLERLRSCTLCYDKCFPDICKKEIVLPENSYMDVAFLLDNSRNVASDEFKDM
KALVSSMLDNFEIASDPIVSDSGDRIALLSYSPWDRREKKVVKTEFEFTTYNSQALMKRY
IETNLQQLNGEATIGHALLWAVENLFPATPKLRKYRVIFVVSAGVNRERKEFLKKMALRA
KCQGYVIFVISVGLTPEEEMEELASHPLDHHLLQLGRIHKPNLDYVVKFLKPFVYSVRRG
FNQYPPPELENICKLIDSEDEENRGIGLPFTPASYEISSGENIIGQELSALRDSSFVLED
NGSDHLVYIPSQMLKPQKLMTKYEKDWNSEAIASLTSDGEDTR
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctgctaattatatttgttcctctcttctggactaaaacgctgtcatatcag
agcccagggccaggccctgagtatgctgatgtggtgtttctggtggacagctccgaccac
ctgggaattaagtccttcccgtttgtgaagacattcatcaacaagatgattagcagcctc
cccatagaggctgacaagtaccacgtgggcctggcccagtacagcgatgggctccacaga
gagttcctgctcagcaccttcaagagcaggggccccatgctgaaccacctcaagaagaac
tttgggttcctggggggctccctgcggattgggaacgctctccaggaggtgcacagggcc
tacttctcaagcgggagggacagaaaacagtttcccccgatcctggtggtcctggcttcc
ggcgagtctgaagatgctgtggaagaggctgccgaagcgctgcgcaaagatggggtgagg
attgtctctgtggggatgcagagggcatctgagaagaccctgaaggccatggccacgggc
cagttccactaccacctccggatggtcagggacctcagcacattctcccaaaacatgacg
cagattctcaaggatgcaactcagtacaaagatgaaacagcctactctgatatagaagtc
ccctttcccagggcctgtaagaaagattcaattgccgacctcatgtttctggtggatgag
gctgttgggaccacagagaatctaaggctcctgcagaacttcctgaagaacatcacctcc
tccatggacgtgcaagacaactgcctgcggcttggacttatgagttacagtgacagagtc
aagacggtttctcttctgagcttgagcacaacccagtctgaatttcaggagcaaatccag
aagctttctctgcgggctgggaaatccagcgctggagctgccattgatcagctgaggagg
aaaggcttctcagcatcacatggcagcagacgggcacaaggagtgccccagatagcagtc
ctggttactgacaggccatcggacgacagtgtgcgtgaggtggccttcgacctccggctg
caggatgtaaccgtgcttgccttgggcattgaaggggccaacaagacccagttagaagaa
atagtgtcttaccctccggagcagaccatctccatgctgcagtcctatgcagacttggat
aattacagtaagaagttcttaaaaaagctccagaatgaaatatggtcccaagtttcggct
cgtgctgaacaaatggaacttgataaaactggctgtgtggacacaaaagaggctgatctc
tatttcctcatcgatggctcaagcagcattcagaaaaaacactttgagcaaatcaaggaa
ttcatgttggcggtgataaggatgtttagcattggtccagacaaagttcgagttggagct
gtgcagtattcccacaagacaaaagtggaatttgatatcagtgactaccttaatgatgtg
aaattaagaaaggctgtttataacatcaagcagcttaggggcagaactcatactggggca
gccctggatttcatgctgccactgatgaaggagggaaggaagcagaggatgaatgaggta
ccctgtcacctcattgtgctgaccgatgggatatctggagatgctgtcctggaacctgct
gagagactaagggctgaaaatatcaccatccatgcgattggtattgggaaggctaacaga
acacaactgcaacagattgcgagggaagaggaaagggttaactttgggcagaactttgat
gctttaaaaagcatcaagaatgaagttgttcgcagtatctgcaccgagaaaggatgtgaa
agcatgaaggctgacatcatgtttctggtggacagttctggcagtataggacctgaaaat
tttgagaaaatgaaaactttcatgaaaaacctgttagataagattcagattggtgaagac
aaaagccgagttggtgtagttcaattcagtcattatagtaaggaagaattccagcttgac
aaatactttacacaaaaagaaatttctgatgcaatagacggcatgtcccccatcagtgac
aatactttgactggaagcgcaataacctttgtggatccatacttcactgagtccaagggg
ggccgctcaatggtaaaaaagtttctcatccttatcactgatggagaagcccaggatgat
gtgagagaccctgcaaaagctcttcgggacaaaggtgtggtcatcttctctgtgggggta
tacggggccaacaggactcagctggaggagatcagtggggatggtggcctgatcttccac
attgagaacttcgatgatctaaaggcaatagagagtaaactcatcttccgcatgtgtgcc
cttcatgattgtaaacggattcagcagttagatgtcgtgttcgtgctggaccactcaggc
agcatcaaccccgaggaccaagaaaacatgatcaacctcaccatccacttggtgaagaaa
tcagacgtgggcctggaccgcgttcggtttggagcgctcagatactcagatgaccctgag
gttcttttctacctcaacaagtactcaagtaaaccagccatcatcgagcatctgaggagg
cgcagggatacggcgggaaggacctacaccgccaaggctctggagcgcgcgaacgacatg
ttcacagaggaacacggcagccgtatcaaacaaaacgtgaggcagatgctgatcattatc
acagatggggtatctcacgacagaaataagctcggtgaggcggcctcaaaattaagaacc
aaaggcgtcatcgtttacgcagtgggtgtaggtgcggctgaccaaatggaactggagacc
atggcgggggataaaaactacacaatccacgtcagtggtttcgacaaactgaaagatatt
tacctgcctgtgcaagacagtatgtgtaacaactcgcaagaggcctgtgacattcaagaa
gctgatgtgattttcttttgtgatggttctgacatggtatctgattcagactttgtgacc
gtgacaactttcttgtcagacttaattgataattttgacatgccatctgagaggatgaaa
attgggatggcccaatttgggagccgctaccaagaaattatcgagttacagaactctctg
actaaaaccgaatggaagtctcggattcaagctatcaccaagagcaagggccttccgcga
atagacttggccctgagaaaagtgggcattatgtttgagccatccgctggtggcagaagg
aacgctggtgtccctcagactttggtggtcatcacatctgggggtccccgctatgatgtg
tcaaaggcagtggaggccctgagagaagctggcatttgtattctggctctgggcatagga
gatgtttataaggaacagctcctgccgataacgggcagttctgaaaaaatcatcactttc
caagactttgataaattaaagaatgtggctgtgcaaaaaagaatggtccgtgaaatctgc
aagagttgcgggaaaaccaactgctttatggacatggtggttggcttcgacatttccact
cacctgccgggtcagccattgttccacggccacccccagctgcagtcatacctcccaagc
atcttagaggacatcacctccatgaggggtgtcagctgcggggcaggtgcagagatgcag
gtgagcgtggccttcaaggtgaacagtgaccaggacgtccctgccaagttccaaatctac
cagcaaacaatatttgacagcctcctgcaagtcaccgtcaacgggccgactcacctgaac
gcgcagttcctgcagtccatgtgggacacgtttgagaatgtgtctacatcccaaggacag
gtgttgctcatcttttcagatggtcttgggcgtgaaagcaaaatgatgcttgaagatcaa
tcggacaggctcagggaagcaggacttgatgctttgctggtagtgtccttaaatgaaacc
gctcacgatgagttttccagcttcgaatttggaaaagggtttgactacaggactcacctg
accattggaatgaaggaactgagcagtatgctatcacagtatctggggaacattgcagag
aggacgtgttgctgtcagttttgcaaatgcccagggattccaggacctcaggggatccga
gggccacaaggctcccagggctctccaggtgtgaaaggcagcagaggacacaggggagag
gagggagagcctggaactcgaggagaaattggaccccaaggaaacaaagggaatgcagga
tgtccagggcagccaggtgaaaagggaaccagaggattttctggatataagggagaacac
ggagatgatgggattgatggactggatggggaagagggctttcatggaattcctgggaaa
aagggagaaaaaggtgatccaggttcccagggcagcccaggttccagaggcccccctggg
ggatatggggagaagggtttcccaggggatcctggtaatccaggacaaagcagtaacatc
aaaggacaaaagggctccaaaggagaacaaggaagccaaggtagaaccgggcagaaaggg
actcaaggcagtcctagctccagaggcagcaggggaagagaaggccagaggggagtccag
ggtgcattgggggaaccgggcacacctggacctcaaggtgcatcaggagctgaaggattg
caaggctcacagggagcaagtggacctccgggcagcaaaggagagaagggaagcgaggga
cgcaaaggacctcagggtgctcctggaccagtaggagataaagggagtgttggaaggcct
ggtcctttggggaaaaagggagaacctgggattcctggagatccagggccagcggggcaa
gtgggacagcgaggaaagcagggtgattatggcattccaggctatggtcctatgggacaa
aaaggagtcaagggtccacgaggattccttggagatatgggccaaaagggtgatgctggt
gatcctggaattcctggggggcctggacccaaaggatttaggggattaacactcatggta
ggccagaaaggtgaagcgggctctcctggaccccaaggcccccctggacggagaggccct
aaagggatggcagggaagcccatatattctcaatgtgatctaatccagttcacgcgggac
catagtccttgttggaaagaaaagtgtcctgtgtatccaacagagctggtatttgccctg
gaccagtccaacgatatcacagagcagagatttaatgaaacgagggacatcatcacttct
attgtcaatgaccttcacatcagggaaagtaattgccctgtgggagccagagttgttgtg
gtttcctacaactcgggcaccggctacctaatccgtgggtctgactaccatagcaagaag
cagcttcttcagcttctctcccaaatgaaatatcaaagttctggggaagtccgagacatt
gggaatgcgatgaggtttgtggctcggaacatctttaagcggacgcctgcaggagccaat
gtgcagagagttgctgtgttttttagcaacggacaagctgcaagcaggtcgtccatcatc
acggccaccatggagttcagcgccttgggtatcagtcctgcagtctttgcttttaatgaa
aaggtttaccttgatgaggcttttgggtttgacgacacaggaacatttcaggtgctttct
gttcctccaaatggggaatatgatccattagaaaggcttcggagctgtacactttgctat
gataaatgttttccagatatttgcaagaaagaaattgtcttacctgaaaattcatacatg
gatgtcgccttcctcttagacaattctagaaatgtagcaagtgatgagtttaaggatatg
aaagccttggtgagctcaatgcttgacaactttgaaattgcctcagaccctatagtctca
gactctggtgataggattgccttgttgagctattctccttgggacaggagagagaagaag
gtggtaaaaacagagtttgagtttacaacttataacagtcaagctctgatgaaaaggtac
attgagactaacctccaacagctaaatggggaagccaccattggtcatgccctactgtgg
gccgtggagaatctcttcccagcaacgcccaagctaagaaaatacagggtcatctttgtg
gtctccgctggagtgaatcgtgagagaaaggaattcttgaagaagatggctctgagggcc
aagtgtcaaggctatgtcatatttgtgatttccgtgggtttgacacccgaggaggagatg
gaggagctggccagccacccgcttgatcaccatctgctacagctggggagaattcataaa
ccaaatctggattatgttgtgaagtttttaaagccgtttgtgtactcagtgagacgagga
ttcaatcagtacccaccaccagagcttgagaacatctgcaaactcattgattcagaagac
gaggaaaatcgaggcatcggtctcccatttactcctgcatcttatgagatttcttcagga
gagaacatcattggccaggaattgagtgctctgagagattcatcttttgtattggaggac
aatggaagcgaccatttggtttacattccaagccagatgcttaagccacagaaattaatg
actaagtatgaaaaagattggaattctgaagcaattgcaagtctcacatctgatggtgaa
gacacaagatga
DBGET
integrated database retrieval system
