Bubalus bubalis (water buffalo): 102395227
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Entry
102395227 CDS
T05912
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X3
KO
K08532
RAR-related orphan receptor alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04659
Th17 cell differentiation
bbub04710
Circadian rhythm
bbub05017
Spinocerebellar ataxia
bbub05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
102395227 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
102395227 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
102395227 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
102395227 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102395227 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
bbub03310
]
102395227 (RORA)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
102395227 (RORA)
Nuclear receptors [BR:
bbub03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
102395227 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
102395227
NCBI-ProteinID:
XP_044781453
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Position
11:complement(53559839..54371619)
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AA seq
510 aa
AA seq
DB search
MESAPAAPDPAASEPGSSGSDAAAGSRETPLNQESARKSEPPAPVRRQSYSSTSRGLSMP
VSSEGTERRRHDPGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ
SNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK
HRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAVSSFY
LDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISK
SHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRID
GFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISF
VFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR
EDGILTKGTKHIQGSSYPLIRKGKEGNFNL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggctcg
gacgcggccgccggctccagggagaccccgctgaaccaggaatccgcccgcaagagcgag
ccgcccgccccggtgcgcagacagagctattccagcaccagcagagggttatccatgcca
gtgtccagtgagggaactgagagaaggcggcatgatccaggtatctcagtaacaaagaag
acacatacatctcaaattgaaattattccatgcaagatctgtggagacaaatcatcagga
atccattacggtgtcattacatgtgaaggctgcaagggctttttcaggagaagtcagcaa
agcaatgccacctactcctgtcctcgtcaaaagaactgtttgattgatcgaaccagtaga
aaccgctgccagcactgtcgattacagaaatgccttgccgtggggatgtctcgagatgct
gtaaaatttggccgcatgtcgaaaaagcagagagacagcttgtacgcagaagtacagaag
caccggatgcagcagcagcagcgagaccaccaacagcagcctggagaggccgagccgctg
actcccacctataacatctcggccaacgggctcacggagcttcacgatgacctcagcaac
tacatcgacgggcacacccccgagggcagcaaggcagactctgccgtcagcagcttctac
ctggacatacagccttccccggaccagtcaggtcttgatatcaatggaatcaaaccagaa
cccatatgtgactacacaccagcatcaggcttcttcccctactgctctttcaccaatgga
gagacttccccaactgtgtccatggcagaactagaacaccttgcacagaatatatctaaa
tcacatctggaaacttgccaatacttgagagaagagctccagcagataacgtggcagacc
tttctgcaggaggagattgagaattatcaaaacaagcagcgggaggtgatgtggcaattg
tgtgccatcaaaattacagaagctatacagtacgtggtggagtttgccaaacgcattgat
ggatttatggaactatgtcaaaacgatcaaattgtgcttctcaaagcaggttctctagag
gtggtatttatcagaatgtgccgtgcctttgactctcagaacaataccgtgtacttcgat
gggaaatatgctagccccgatgtcttcaaatccttaggttgtgaagactttattagcttt
gtatttgaatttggaaagagtttatgttctatgcacctgactgaagatgaaattgcatta
ttttctgcatttgtcctgatgtcagcagatcgctcatggctgcaggaaaaggtaaaaatt
gaaaagctgcaacagaaaattcagctagctcttcaacatgtcctacagaagaatcaccga
gaagatggaatactaacaaagggaacaaaacatatacaaggatcgagctaccctttgatc
agaaaaggcaaagaaggaaatttcaacttgtga
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