Bubalus bubalis (water buffalo): 102395311
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Entry
102395311 CDS
T05912
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X5
KO
K23625
ataxin 2/2L
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub05014
Amyotrophic lateral sclerosis
bbub05017
Spinocerebellar ataxia
bbub05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102395311 (ATXN2)
05017 Spinocerebellar ataxia
102395311 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
102395311 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102395311 (ATXN2)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102395311 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
102395311
NCBI-ProteinID:
XP_025122854
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All DBs
Position
17:17398609..17500523
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AA seq
1114 aa
AA seq
DB search
MSLKPQQQQQQQQQPQPQPAAANARKPGGGGGGGLLTSPAAAPSSVSSSSAAASSSSSSV
AAASTGGGRPGLGRGRNSSKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIY
EGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARR
DAFTDSAISAKVNGEHKEKDLEPWDAGELTTNDELEALENDVSNGWDPNDMFRYNEENYG
VVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEK
YTAVQRNSSEREGHNINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTS
HTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPS
RPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFV
SHTPPSEAAAPPTARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASP
QAGIIPAEAVAMPVPAASPTPASPASNRAVTPSLEAKDSRLQDQRQNSPAGNKENMKPSE
TSSSFSKAENKGISPIVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEKSRD
LIKDKIEPNAKDSFIENSSNCTSGSSKPSSPSISPSVLSNTEHKRGPEVTSQGVQTSSPG
CKQEKEDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGH
QQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQD
QHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPV
IQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSL
AQQYAHPNATLHPHPPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQ
QSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHVPQY
KPTTNSSCKAALEEPKGQIPSSLLLLLPTGSTEN
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaagcctcagcagcaacagcagcagcagcagcagccgcagccgcagcccgcg
gccgccaatgcccgcaagcctggcggcggcggcggcggcggccttctcacgtcgccagcc
gccgcgccgtcctcagtctcgtcgtcctcggccgcggcttcctcctcctcctcctcagtg
gcggcggctagcacaggcggcgggcggccgggcctgggcagaggccgaaacagtagcaaa
ggactgcctcaatccacgatttcttttgatggaatctatgcaaatatgaggatggttcat
attcttacatcagttgttggatccaaatgtgaagtacaagtgaaaaacggaggtatatat
gaaggagtttttaaaacatacagtcctaagtgtgatctggtacttgatgctgcacatgag
aaaagtacagaatccagttcggggccaaaacgtgaagaaataatggagagtattttgttc
aagtgttcagactttgttgtggtgcagtttaaagatatggactccagttatgcaagaaga
gatgcttttactgactctgctatcagtgctaaagtgaatggtgaacacaaagaaaaggac
ctggagccttgggatgcaggtgaactcactaccaatgacgaactggaggctttggaaaat
gatgtttctaatggatgggatcccaacgatatgtttcgatataatgaagaaaattatggt
gtagtgtctacatacgatagcagtctgtcttcatatacggtgcccttagaaagggataac
tcagaagaatttttaaaacgagaagcaagggcaaaccagttagcagaagaaattgaatca
agtgcccagtataaagcccgggtggccctggaaaatgatgataggagtgaagaagaaaaa
tacacagcagttcagagaaattccagtgaacgtgagggccacaacataaacactagggaa
aataaatatattcctcctggacaaagaaatagagaagtcatatcctggggaagtgggcgt
cagaattcaccacgtatgggccagcctggatcgggctccatgccatcaagatccacctct
cacacttcagatttcaacccgaattctggttcagaccaaagagtagttaatggaggtgtt
ccctggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccagtcaggt
cccaactctcttccacctcgggcagccacccctacacggccgccctccaggcccccctcg
cggccatccagacccccgtctcacccctctgctcatggttctccagctcctgtctctact
atgcctaaacgcatgtcttcagaagggcctccaaggatgtccccaaaggcccagcgacac
cctcgaaatcacagagtttctgctggaaggggttccatttccagtggcctagaatttgta
tcccataccccaccaagtgaagcagctgctcctccaacagcaaggaccagtcctgcaggg
ggcacatggtcatccgtggtcagcggagttccaagattatcccctaaaacacacagaccc
aggtctcccagacagaatagtattggaaatactcctagtgggccagttcttgcttctccc
caagctggtattatcccagctgaagctgttgctatgcctgtaccagctgcatctcctaca
cctgccagtcctgcatccaacagagctgttaccccatctcttgaggctaaagattccagg
cttcaagatcagaggcaaaactctcctgcagggaataaagaaaatatgaagcccagtgag
acatcatccagcttctcaaaagctgaaaataaaggtatatcaccaattgtttctgaacat
agaaaacagattgatgatttaaagaaatttaagaatgattttaggttacagccaagttct
acttctgaatctatggatcagctgctaaacaaaaatagagagggagaaaaatcaagagat
ttgatcaaagacaaaattgaaccaaatgctaaggattctttcattgaaaatagcagcaac
tgcaccagtggcagcagcaagccgagcagccccagcatttccccttcagtcctcagtaac
acggagcacaagaggggacctgaggtcacatcccaaggggttcagacttccagtccagga
tgtaaacaagagaaagaagataaagaggagaagaaagacgcagctgagcaagtgaggaaa
tcaacgttgaatcccaatgcaaaggagttcaaccctcgttctttttctcagccaaagcct
tctaccaccccaacttcgcctcgtcctcaagcacaacctagcccatctatggtgggtcat
cagcagccaactccagtttatactcagcctgtttgttttgcaccaaatatgatgtatccg
gtccctgtgagcccgggcgtgcaacctctgtatcctatacctatgacgcccatgccagtc
aatcaagccaagacatatagagcaggtaaagtaccaaatatgccgcaacaacggcaagac
caacaccatcagagtaccatgatgcacccagcctcagcagcaggcccaccaattgtggcc
accccaccagcttattccacacagtatgtcgcctacagtcctcagcagtttccaaatcag
cctcttgttcagcatgtgccacattatcagtctcagcatcctcatgtctatagtcctgta
atacagggtaatgctagaatgatggcaccaccaacacatgcccagcctggtttagtgtcc
tcttcagcgactcagtacggggctcatgagcagacacatgcgatgtatgcatgtcccaaa
ttaccatacaacaaggagacaagcccttctttctactttgccatttccactggctccctt
gctcagcagtatgcgcaccctaatgctaccctgcacccacatcctccacatcctcagcct
tcagctacgcccaccggacagcagcaaagccaacatggtgggagccatcctgcacccagt
cctgttcagcaccatcagcaccaggccgctcaggctctccatctggccagtccacagcag
cagtctgccatttaccatgcggggcttgcgccaaccccaccttccatgacacctgcctcc
aatacacagtctccacagaatagtttcccagcagcacagcagaccgtctttaccattcat
ccttctcatgttcagccggcttacaccaatccaccccacatggcccatgtacctcagtac
aagcccaccaccaacagcagttgtaaggctgccctggaggaaccgaaaggccaaattccc
tcctcccttctactgcttctaccaactggaagcacagaaaactag
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