Bubalus bubalis (water buffalo): 102395526
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Entry
102395526 CDS
T05912
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102395526 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102395526 (CSTF3)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102395526 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
102395526
NCBI-ProteinID:
XP_006080457
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All DBs
Position
16:21098446..21166928
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AA seq
717 aa
AA seq
DB search
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagacggagccacggagcaggcagctgagtatgtcccagagaaggtgaagaaa
gccgaaaagaaattagaagagaatccttatgaccttgacgcttggagcattctcattcga
gaggcacagaatcaacctatagacaaagcacggaagacttatgaacgccttgttgcccag
ttccccagttctggcagattctggaaactgtacattgaagcagagattaaagctaaaaat
tatgacaaggtagaaaagctatttcagagatgccttatgaaggttttgcacattgattta
tggaagtgttatctttcatatgtccgagaaaccaagggtaaactaccaagttacaaagaa
aagatggctcaagcatatgactttgcactggataaaattggaatggaaattatgtcttac
cagatttgggtggattacatcaacttcttaaaaggcgtagaagctgttggatcttatgca
gaaaatcagagaataacagctgttcgaagagtttatcaacgaggttgtgttaatccaatg
atcaacattgaacagctgtggagagactataacaagtatgaagagggtatcaatattcat
ttagctaaaaaaatgattgaagatcggagtagagattacatgaatgctaggcgggtagca
aaggaatatgagacagtaatgaaaggtttggaccgcaatgctccctcagtgcctcctcag
aatactcctcaggaagctcagcaggtggatatgtggaagaagtacatccagtgggaaaag
agcaaccctctacgtacagaagatcagaccctgataactaaaagagttatgtttgcttat
gaacagtgcctgctggtgctgggccatcaccctgatatttggtatgaagctgcccaatac
cttgagcaatcaagtaaactgttagcagagaagggggatatgaataatgccaaattattt
agtgatgaagctgctaatatatatgaaagagccataagcactttattaaagaagaatatg
cttctttattttgcatatgcagattatgaagagagtcgcatgaagtatgagaaagttcac
agtatatataacaggcttctggcaattgaggatattgatcccaccttggtatatatccaa
tatatgaaattcgcaagaagagctgaagggatcaaatctggaagaatgatatttaaaaaa
gcaagagaagataccagaacccgccaccatgtctatgttactgcagcactcatggaatat
tactgtagtaaggacaaatctgttgcctttaagatttttgagctggggctaaagaaatat
ggagacattccagaatatgtcctggcctatattgactatctttctcacctcaatgaggac
aataatactcgagttttgtttgaacgagttttaacatctggaagtcttcctcctgagaaa
tctggagaaatctgggcccgatttctagcttttgaaagtaatattggtgatctagctagt
atactcaaagtggagaaaagacggtttacagcattcaaagaagagtatgaaggcaaagaa
acagctttactggtagacagatacaagttcatggatctatatccttgctctgcaagtgaa
ctaaaagcacttgggtataaggatgtctcccgtgctaagctagcagctataattccagac
ccagttgtagctccttctatagtgcctgttctgaaagatgaagtggatagaaaaccagaa
taccctaaaccagacactcagcagatgattccatttcagccacgacatttagcacctccg
ggcttgcaccctgtccctggtggagtgttcccagtgccacctgcagcagttgttttaatg
aaacttctccctcctcctatttgtttccagggtccttttgtacaagtggatgaactaatg
gaaattttccgaagatgcaagataccaaatacagttgaagaagctgtgaggatcattact
ggaggagccccagagctagcggtagaaggcaacggcccagtggaaagtaatgcagtgctc
acgaaggctgtcaaaaggcccaatgaggattcagatgaagacgaggaaaagggagctgtg
gttccccctgttcatgacatttacagggcgaggcagcagaagcgaatccggtga
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