Bubalus bubalis (water buffalo): 102395704
Help
Entry
102395704 CDS
T05912
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102395704 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102395704 (EDC4)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102395704 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102395704 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
102395704
NCBI-ProteinID:
XP_025124680
LinkDB
All DBs
Position
18:34953815..34964950
Genome browser
AA seq
1403 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAENQRSSNAYNGDLNGLLVPDPLCSGDSA
STNKPGLRAMPPINLQEKQVICLLGDDSSTGIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALINGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRTNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSPVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPSHS
THEDFAFPTAFGESRPELGSEGLGSATHGSQPDLRRIVELPAPADFLSLSSETKPKLMTP
DAFMTPSASLQQIAASPSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSP
KLQLDGSLAMSSSSLQASPRGLLPGLLPGPADKLTPKGSGQVPTAASALALELQEVEPLG
LPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGASAPEGLEPDSMASAASALHL
LSPRPRPGPELGPQLSLDGVPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETC
SSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGNFGTK
VPTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSLGSRLTEHQVAETPEDWPALIWQQQ
RELAQLRHSQEELLQRLCAQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQ
LQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVE
SSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIN
DSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSGSVRA
EVQHQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAH
LDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVL
LSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPH
NSLGKAARRLSLMLHGLMTPSLP
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcttgcgcgagcatcgacatagaggacgccacgcagcacctgcgggatatc
ctcaagctggaccggccggcgggaggccccagtgcagagaaccaacgatcatctaatgcc
tacaatggagatctcaatgggctcctggtcccagaccccctctgctcaggtgacagtgct
tcaacaaacaagcctggtctccgagccatgccacctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccactggcattggaattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcgagcaaggcacgggggagcaacaaggtgaaa
attcagcctgtcgccaagtatgactgggagcagaaatactactatggcaacttgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcaatggtg
cgagtgatcagtgtcagcacttcagagcggaccctgctcaaaggcttcacaggcagcgtg
gctgatctggcctttgcacacctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtatggcgcttggccctgattaatggcaaaattcaagaggagatcttggtc
cacatccgccagccagagggcactccgctgaaccacttccgcaggatcatctggtgcccc
ttcatccccgaagagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtgtgggacctggacatgctccgtaccaaccacagcacctgg
cccgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ttgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagtcatgatggc
ttcgtcaagttctggcagatctacattgagggacaggatgagccacggtgtttacatgag
tggaagcctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccctttctggagattcctcattactggcgctgaccagaatcgggag
ctgaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagcccagtgagtgtgccccccagcctcaaggtttgcctggacctctcagcggaa
tacctgatcctcagtgatgtacagcggaaggtcctctacgtgatggaactgctgcagaac
caggaggagggccgggcctgcttcagctccatctctgagttccttctcacccaccctgtc
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacacagaggtgctgcct
gccgaggaggagaatgacagccttggggccgatgggacccatggagcaggtgcaatggag
tctgcagccggtgtgcttatcaagctcttttgtgtgcacactaaggcattacaggacgtc
cagatccgctttcagccgcagctgaaccctgacgttgtggccccactcccctcgcactct
acccatgaagactttgccttccccacagcatttggagagtctcggccggagctgggctca
gagggcctgggatcagccactcatggctcccagcctgacctccgacgtatcgtggagtta
cctgcaccagctgacttcctcagtctgagcagtgagaccaagcccaagctgatgacacct
gacgccttcatgacgcctagcgcctccctgcagcagatcgctgcatctcccagcagcagc
agcagcagcagcagtagcagcagcagcagctcctctctcacagccgtgtctgccatgagc
agtacttcggccgtggacccctccttgcccaggccacctgaggagctgaccttgagcccc
aagctacagctggatggcagtctggccatgagcagcagcagcctgcaggcaagcccacgt
gggctcctgcccggcctgctcccaggtccggccgacaaactgactcctaaagggtctggt
caggtgcctactgctgcctctgcactcgccctggagctgcaggaagtggaacccctgggg
ctgcctcaggcttcccccagccgcacccgctcccccgatgttatctcctcagcctccact
gccttgtcccaggacatccctgagattgcatctgaggcactgtcccgtggctttggcgcc
tctgctcctgagggcctggagccagacagcatggcctcagcggcctcggcgctccacctg
ttgtctccacggccccggccagggcccgagctcggcccccagcttagcctggatggggtc
cctggggatggggatcggcatagtaccccttccctcctggaggcagccttgacccaggag
gccacggcccctgacagtcaggtctggcctacagctccagacatcactcgtgagacctgc
agcagcctggcagagagcccccggaatggcctccaggaaaagcacaagagcctggccttc
catcgaccaccttatcacctgctgcagcaacacgacagccaggacgccagtgccgagcaa
agtgaccatgatgacgaggtggccagcctcgcctctgctgcagggaactttggcaccaaa
gtgcccactccacgtcttccagccaaggactggaagaccaaaggatcccctcgggcctca
cccaagctcaagagaaagggcaaaaaggatgatggggattcatccttgggatcccggctc
acagagcaccaggtggcagaaacccctgaggactggccagcactgatctggcagcagcag
agagagctggcacagctgcggcacagccaagaagagctgctgcagcgcctgtgcgcccag
cttgaaggcctgcagagcaccgtcacaggccacgtggagcgagccctggagtcaaggcac
gagcaggagcagcggcgactggagcgggccctggccgaggggcagcagcggggtgggcag
ctgcaggagcagctgacacagcagctatcccaggcactgtcttcagcggtggcagggcgg
ctggagcgcagcatacgagacgagatcaagaagacagttcctccatgtgtctcccggagt
ctggagcccgtggctggccagctcagcaactcggtggccaccaaactcacagctgtggag
agtagcatgaaagagaacatctctaagctgctcaagtccaagaacttgacagatgccatt
gcccgagcagctgcagacacattacaggggccaatgcaggctgcctaccgggaagccttc
cagagtgtggtcctgcccgccttcgagaagagctgccaggccatgttccagcagatcaat
gatagcttccgactgggcacacaggagtacttgcagcagttggagagccacatgaagagc
cgcaaggcacgagagcaggaggcacgggagcctgtgctggcccagctgcggggcctggtc
agcaccctgcagggggccacggagcagatggcggccactgtgtctggcagcgttcgggct
gaggtgcagcaccagctgcacgtggccgtgggcagcctgcaggaggcgattctagcacag
gtacagcgcatcgtgaagggcgaggtgagtgtggctctcaaggagcagcaggccgccgtc
acctctagcatcatgcaggccatgcgctcagccgccggcacacctgtccccgctgcccac
ctcgactgccaagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaat
caggccttccagcaggccctgacagctgccgacctgaacctggtgctatacgtgtgtgaa
acagtggacccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactc
ctttctctcatccagcaactggcctctgatcttggcactcgaactgacctcaagctcagc
tacctggaagaggctgtaatgcacctggaccacagtgaccccatcactcgggaccacatg
ggctccgtcatggctcaggtgcgccagaagctcttccagttcctgcaggcggagccacac
aactcacttggcaaagcagcccggcgtctcagcctcatgctgcacggccttatgaccccc
agcctcccttag
DBGET
integrated database retrieval system
