Bubalus bubalis (water buffalo): 102396468
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Entry
102396468 CDS
T05912
Symbol
BLM
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03440
Homologous recombination
bbub03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102396468 (BLM)
03460 Fanconi anemia pathway
102396468 (BLM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbub03032
]
102396468 (BLM)
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102396468 (BLM)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
102396468 (BLM)
DNA replication proteins [BR:
bbub03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
102396468 (BLM)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
102396468 (BLM)
Bloom's syndrome complex (BTR)
102396468 (BLM)
FA (Fanconi anemia) pathway
102396468 (BLM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BLM_N
BDHCT_assoc
DEAD
BDHCT
Helicase_C
RecQ_Zn_bind
RQC
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
102396468
NCBI-ProteinID:
XP_006058333
LinkDB
All DBs
Position
20:48140050..48232078
Genome browser
AA seq
1429 aa
AA seq
DB search
MAAVPQNNLQEQLERHSARKLNNKLSLSKPKSSGFTFKKKVPSANDVSVTSVSVAKTPVL
SDKDVNITEAFSFSEPLPHTTNQQTGINDFKSTPSRPQSKRAGSKPLLPSLSQVPQEVSC
TAQNTPVIKQSLNATFKKLEFSSSSDSLIAFNDWDDMDDFDTSGNSKAFVTPCKNHFVRV
STAQKSKKSKRNLVKAQLNKTHTGETDLAPSFSESKQEHLTEKQKDDSEWLSSDVICIDD
DPDPEELINEDTQENHSLKTHLGAERGNCEKKKNLEETELHSVEKSSCIELDEDDYDIDF
VPPSPEEGMTSASSSLKCSSMLKDLDTSDKKHSLSTSEDLSKPKEMATQQPNRETSTSCE
ARQTSLQQQLIRVMDRICKLVDAVPDDELKALDCGNKLLQQRDIRRKLLAEADFDPSDAS
VLSAMWGCRPDPLESPLEDSASVSLPYAFRKGDSCPAGNAVKEFTLPHLPSNSMSTREHL
LTPPLGKTGVSATTKSPFERPLFSSHLQKSFVSSNWAETPRAEKRNESPDFPGNVLTSTA
VKDQNKHTTSINDLERELQAACEIDNFDIDDFDDDDDDWENLMQNLAASKSSTAAYPPIK
EGRPVKSVSERPSSAKTDCLPGASTTQNKNFSESIPNYPDKMEQNVASRNPKHERFQSLN
FPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPG
VTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPE
KVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMA
LTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPH
DSGIIYCLSRRECDTVAETLQNDGLAALAYHAGLSDSARDEVQHKWVNQDGCQVICATIA
FGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILME
KDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNCYK
TKDFKTKDVTDDVKNIVRFVQEHSSSQGTRNIKHIGPSGRFTMNMLVDIFLGSKSAKIQS
GIFGKGSTYSRHNAERLFKKLILDRILDEDLYINANDQAIAYVMLGSKAQTVLNGHLKVD
FMETENSSSVKKQKALVAKVSQREEVVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKK
LAESLSSDPEVLLQIDGVTEDKLEKYGAEVIPILQKYSEWTLPAEDTSPRRSPSSSRGTR
KNTPEESDEEAPISSHYFANKTRNERKRKRMPASQKAKRRRTGFSGSRTKGGSNTCRRIP
SKTKPSNIIGPSSTLHGSQAASGVSRKLGIMAPPKPINRPFLKPSYAFS
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgttcctcaaaataatctacaggaacaactggaacgtcattcggcaagaaag
cttaacaataaattgagtctttcaaaaccgaaatcttcaggtttcacttttaaaaagaaa
gtgccttcagccaacgatgtctctgtaactagtgtgtcagtggcaaaaacacctgtgttg
agtgataaagatgttaatatcactgaggccttttccttcagtgaacctttaccccacacc
accaatcagcagacagggatcaatgactttaaaagcactccatccagaccgcaatctaag
agagctggttcaaaaccattattgccaagtttgtcgcaggttccccaggaagtttcatgt
acggcccagaacacaccggttataaaacaatccctcaatgctactttcaagaaattagaa
tttagttcctcatcagattctcttattgccttcaatgattgggatgatatggatgacttc
gatacttctggaaattctaaagcatttgtgacaccatgtaaaaaccacttcgtaagagta
agcactgctcagaaatcaaaaaaatctaagaggaacttagtaaaagcacagcttaataaa
acacatacaggggagactgatttggctccctccttctctgagagcaagcaggaacatttg
actgagaaacagaaggatgactcagaatggttaagtagtgatgtgatttgcattgatgat
gaccctgatcccgaagagctgataaatgaagatactcaggaaaatcactcgttaaaaact
catttgggagcggaaagaggtaattgtgaaaagaagaaaaacttggaagaaacagaatta
cattcagtggagaagtcttcatgcattgagcttgacgaagatgattatgacatagatttt
gtcccaccttctccagaagaaggaatgacttctgcctcgtcctctttaaaatgctctagt
atgttgaaggatcttgacacctctgacaaaaagcatagtcttagcacatcagaagacttg
tcaaaacccaaggaaatggccacacaacagcctaatcgagaaaccagcacaagctgtgaa
gctagacagacaagtttacagcagcagcttatccgtgtgatggaccgaatctgtaaatta
gttgatgctgttcctgatgatgagctgaaagctttggattgtgggaacaagctgctccag
cagcgggacataagaaggaaactcctagctgaagcggattttgatcccagtgatgccagt
gttcttagcgccatgtgggggtgtaggcctgatcccctggagagccctttggaggactcg
gcctctgtttccttaccttacgcgtttcggaagggtgactcctgtcctgcagggaatgct
gtgaaggagttcactcttccacacctcccctcaaattccatgtccacccgggaacattta
ctgactcctcccctaggaaagacgggagtctcagccaccacaaagagtccctttgaaaga
ccgctattcagttcccatttacagaagtcctttgtaagtagcaactgggctgaaacaccg
agggcagagaaaagaaatgaaagccctgatttcccaggaaatgttctcacaagcacggct
gtgaaagatcagaataaacataccacctccataaatgacttggaaagagagctccaggct
gcttgcgagattgacaattttgacatagatgactttgacgatgatgatgatgactgggaa
aatctgatgcaaaatttagcagccagcaaatcttccacagctgcctacccacccattaag
gaaggtcgaccagttaaatcagtgtcagaaagaccctcttccgccaagacagactgcctt
ccaggggcatctactactcaaaataaaaacttctcagagtcaattccgaattaccctgac
aagatggagcagaatgtagcatccagaaatccgaaacatgagcgtttccagagtcttaat
tttcctcatacaaaagaaatgatgaagatttttcataagaaatttggcctgcataatttt
agaactaatcagctagaggcgatcaatgctgcactgcttggcgaagactgttttatttta
atgcccactggaggtggtaaaagcctgtgttaccagcttcctgcctgtgtttctcctggg
gtcacaattgtcatttcccctttgagatcacttatagtagatcaagtccaaaagctgact
tccttggatatcccagctacatatctgacaggtgataagacggactcagaagctacaagt
atttacctccagttatcaaaaaaagacccaattataaaacttctgtatgttacaccagag
aaggtctgtgcgagtaacaggctgatctctactctggagaatctgtatgagaggaagctc
ttggcacgttttgtcattgatgaagcgcactgtgtgagtcagtggggacatgattttcgt
ccagattacaaaagaatgaatattcttcgccagaagttcccttctgttccagtgatggct
ctcactgccacagccaacccccgggtacagaaggacatactcactcagctgaagattctc
aggcctcaggtgtttagcatgagcttcaacagacacaatctaaaatactacgtgttaccc
aaaaaacctaaaaaggtggcatttgattgcttagaatggatcagaaagcatcacccacat
gactcagggataatttactgcctctccaggcgagaatgtgacacagtggctgaaacgcta
cagaacgatggccttgctgccctggcttatcacgccggcctcagcgactccgccagagac
gaagtgcagcacaagtgggttaatcaggatggctgccaggttatctgtgcaacgattgcc
tttggaatgggcatcgacaagccggacgtgcgctttgtgatccacgcctccctcccgaag
tccatggagggttactaccaagagtctggccgagccggaagagacggggagatctctcac
tgcatactcttctacacctaccacgacgtgacccggctgaagaggcttatcctgatggaa
aaagatggaaaccgtcatacacgagagacccacttcaataatttgtatagcatggtacat
tactgtgaaaatataacagaatgtaggagaatacagcttttggcttactttggcgaaaat
gaatttaatcctcatttttgtaagaaatacccagatgtttcatgtgataactgctataaa
acaaaggattttaagacaaaagacgtgactgatgatgtgaaaaatattgtaagatttgtt
caagaacacagttcatctcagggaacaagaaatataaagcatataggtccttctgggagg
ttcactatgaacatgctggtcgacattttcttggggagtaagagtgcaaaaattcagtca
ggaatttttggaaaaggatctacttattcaagacacaatgccgaaagactttttaaaaaa
ctgatactggacaggattttggatgaagacttatatatcaatgccaatgatcaagcaatt
gcctatgtgatgctcggaagtaaagcacaaaccgtactaaatgggcatttaaaggtagac
tttatggaaacggaaaattccagcagtgtgaaaaaacaaaaagcattagtggcaaaggtg
tctcagagggaagaggtggtgaagaaatgtcttggagaacttacagaagtctgcaaatct
ctggggaaagtttttggcgtccactactttaatatttttaataccgtcactctcaagaag
ctcgcagaatctttatcttctgatcctgaggttttgcttcaaattgatggtgttaccgaa
gacaaactggaaaaatatggtgctgaagtgattccaatattacagaaatactctgagtgg
acattgccagctgaggacacctccccacggagaagcccctccagcagcagaggcaccaga
aaaaacactcctgaggagtcggatgaggaagcacccatatcttctcactactttgcaaat
aaaaccagaaacgaaagaaagaggaaaaggatgccagcctcccaaaaagccaagaggaga
agaactggtttcagtggttccaggacgaaaggggggtccaacacatgccgaaggatacct
tctaaaactaaaccctccaacataatcggacccagttccactttgcatggttctcaagca
gcatcaggagtcagtaggaaactggggattatggctccaccaaagcctataaatagacca
tttctgaagccttcatacgcattttcgtaa
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integrated database retrieval system
