Bubalus bubalis (water buffalo): 102396971
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Entry
102396971 CDS
T05912
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X3
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03082
ATP-dependent chromatin remodeling
bbub04714
Thermogenesis
bbub05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102396971 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102396971 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102396971 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102396971 (ARID1A)
03021 Transcription machinery [BR:
bbub03021
]
102396971 (ARID1A)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102396971 (ARID1A)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
Helix-turn-helix
ARID
102396971 (ARID1A)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102396971 (ARID1A)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102396971 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
102396971
NCBI-ProteinID:
XP_044794023
LinkDB
All DBs
Position
2:complement(178486815..178555490)
Genome browser
AA seq
2217 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQQQQREEAGGEAAAAVAAERGEMKAAAGQES
EGPAVGPPQPLGKELQDGAESNGGGGGGGAGGPGAEPDLKNSNGNAGPRPALNNNLTEPP
GGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGL
AALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPG
SGAAAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAAGGTPQPTATPTLNQL
LTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRS
HHAPMSPGSSGGGGQSLPRTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGY
PGQPYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPH
PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQPSPTPYPSQ
QSSTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRF
PPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGAL
SPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPA
AVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPS
GGQMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGA
GGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQET
AVAMHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANN
SAGMAASPEMMGLGDVKLTPASKMNNKADGTPKTESKSKVNKNKKWRELATNLNVGTSSS
AASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTP
QSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQKRNSMTP
NPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRAAGPG
LGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPDSGMYSPSRYPPQ
QQQQQQQRHDSYGNQFSAQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGE
MYSVPYSAGQGQPQQQQLPPAQPPPANQQQAAQPPPQQDVYNQYGNAYPATAAAATERRP
AGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPMQASAEVAQQGTMWQGRNDMTYN
YANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAPVPPMTRP
PPANYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAP
APVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWA
LDTINILLYDDNSIMTFSLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDP
GRFSKASSPAPVEGEEEEDLLGPKLEEEEEEEVIENDEEMAFSGKDKAASENSEEKLISK
FDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPS
RPHVPCPPVPRKYVTAVEGTPGTTEQEGPPPDGPPEKRITATMDDVLSTRSSTLTEEGAK
SVEASKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCICVSNTI
RSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEW
WWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGP
NAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAV
VLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSV
DMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6654 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcagcagcagcgggaggaggcggggggcgag
gcggcggcggcggtcgcggcggagcgcggggaaatgaaggcagccgccgggcaggaaagc
gagggccccgccgtggggccgccgcagccactgggaaaagagctgcaggacggggccgag
agcaatgggggtggcggcggcggcggagccggcgggcccggcgcggagccggacctgaag
aactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgccc
ggcggcggtggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggcc
gccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtc
gccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctg
gcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcag
aactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagc
gcctaccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggc
tccggcgcggcggcggcggcggccgccggctccaagccgcctccctcctccagcgcctcc
gcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggc
ccctcagcggccgcagggggaaccccccagcccaccgccacccccaccctcaaccaactg
ctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactacggcggc
gggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggg
gctgctgctgctgcggcggcggcggctgcggccgcctcgggaggggcccaacaaaggagc
caccacgcgcccatgagccctgggagcagcggcggcggggggcagtcgctcccccggacc
ccgcagccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcggg
actaacccatactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtac
ccagggcagccatatgggtcccagaccccacagcggtacccgatgaccatgcagggccga
gcgcagagtaccatgggcggcctctcttatgcacagcagattcctccttatggacagcaa
ggccccagcgggtatggtcagcagggccagactccatattacaaccagcaaagtcctcac
ccccagcaacagcagccaccctactcccagcagccaccatcccagaccccccatgcccaa
ccttcgtatcagcagcagcctcagtctcagccaccgcagctccagtcctctcaacctccg
tactcccagcagccgtcccagcctccccatcagccgtccccgactccatacccctcccaa
cagtccagcacccagcagcacccccagagccagcccccctactcacagccgcaggcacag
tctccttaccagcagcagcaacctcagcagccagcatcctcgacgctttcccagcaggct
gcgtaccctcagccccagtctcagcagtcacagcaaactgcctactcccagcagcgcttc
cctccaccgcaggagttatctcaagattcatttgggtctcaggcatcctcagccccctca
atgacctccagtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttca
agcttgcctgatctgtctggttcaatagatgatctccccatggggacagaaggagctctg
agccctggagtgagcacatcagggatttccagcagccagggggagcagagtaatccagct
cagtctcccttctctccccatacctcccctcacctgcctggcatccgaggcccctcccca
tccccggttggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgct
gcagtgccaggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatg
catccttctatgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaacccc
cagatgccccagtacagttccccccagcccgggtcagccttatctccacgtcagccttct
ggaggacagatgcacacaggcatgggctcctaccagcagaactccatggggagctatggt
ccccaggggagtcagtacggcccacagggaggctaccccaggcagccaaactataatgcc
ttgcccaatgctaactaccccagtgcaggcatggctggaagcatgaaccctatgggtgct
ggaggtcagatgcatgggcagcctggcatcccaccttatggcacactccctcccgggagg
atgagtcatgcctccatgggcaaccggccttatggccctaacatggccaatatgccacct
caggttgggtcagggatgtgtccccctcccgggggcatgaaccggaaaactcaagaaact
gctgtcgccatgcatgttgctgccaactcgatccaaaacagaccacccggctaccccaat
atgaatcaagggggcataatgggaactggacctccctatggacaggggattaatagtatg
gctggcatgatcaaccctcagggacccccatatcccatgggtggaaccatggccaacaat
tcagcaggaatggcagccagtccagagatgatgggtcttggggatgtcaagttaactcca
gcctccaaaatgaacaacaaggcagatgggacacccaagacggaatctaaatccaaggtc
aacaagaacaagaagtggcgggaacttgcgaccaacctcaatgtcggcacctcaagcagt
gctgccagctccttgaaaaagcagtacatccagtgtctctatgcctttgagtgcaagatc
gaacggggagaagaccctcccccagacatctttgcagctgctgattccaagaagtcccag
cccaagatccagcctccctcgcctgcgggatcagggtcgatgcaggggccacagacacct
cagtcaaccagcagctccatggcagaaggaggagacctgaagccaccgactccagcatcc
acgccgcacagccagatcccccccttgccaggcatgagtaggagcaattcagttgggatc
caggatgcctttcctgatggaagtgaccccacattccagaagcggaattccatgactcca
aaccctgggtaccagcccagtatgaatacctccgacatgatggggcgcatgtcctatgag
ccaaataaggatccttacggcagcatgaggaaagctccggggagcgatcccttcatgtcc
tcaggtcagggccccaatggcgggatgggggacccctacagccgagctgccggccctggg
ctgggaaatgtggcaatgggaccgcgacagcactatccctatggaggtccttatgacaga
gtgaggacggagcctggcataggacctgagggaaacatgggcactggggccccacagccg
aatctcatgccttccaacccagactcggggatgtattctcccagccgttacccgccgcag
cagcagcagcagcagcagcaacgacatgattcctatggcaatcagttctccgctcaaggc
accccttccggcagccccttccccagccagcagaccacaatgtatcagcagcagcagcag
aattacaagcggccgatggatggcacctacggccctcctgccaagcggcacgaaggggag
atgtacagcgtgccgtacagcgcggggcaggggcagccccagcagcagcagctgcccccc
gcccagcccccacctgccaaccagcagcaagctgctcagcctccccctcagcaggacgtg
tacaaccagtacggcaacgcctatcctgccactgccgctgctgctactgagcgccgacca
gcaggcggcccccagaaccagtttccattccagtttggccgggaccgtgtctcagcaccc
cctggctccaatgcccagcagaacatgccaccacagatgatgggcggccccatgcaggca
tcggctgaggttgcccagcaaggcaccatgtggcaggggcgcaatgacatgacctacaac
tacgccaacaggcagagcacgggctcggccccgcaaggccccgcctatcatggcgtgaac
cgaacagacgaaatgctgcacacggatcagagggccaaccatgaaggcccctggccttcc
catggcacacgccagcccccctatggtccttctgcccccgtgccccccatgacaaggccc
cctccagccaactaccagcccccaccaagcatgcagaatcacattcctcaggtatccagc
cccgctcccctgccccggccaatggagaaccgcacctctccgagcaagtctccattcctg
cactctgggatgaagatgcagaaggcagggcccccagtacccgcctcgcacatagcacct
gctcccgtgcagccccctatgattcggcgggacatcaccttcccacctggctctgttgaa
gccacacagcctgtgttgaagcagaggaggcggcttacaatgaaagacattggaaccccg
gaggcatggcgggtaatgatgtccctcaagtctgggctgctggcagagagcacgtgggca
ttagacaccattaacatcctgctgtacgatgacaacagcatcatgactttcagcctcagt
cagctcccagggttgctcgaactccttgtggaatatttccgacgttgcctgattgagatc
tttggcattttaaaggagtatgaggtgggtgacccaggacagagaacactattggaccct
gggagattcagcaaagcgtctagtccagcccctgtggagggggaggaggaggaagacctt
ctaggtcccaaactagaggaggaagaagaggaggaagtaattgaaaatgatgaggagatg
gccttttcgggcaaggacaaagcagcctcagagaatagtgaggagaaactgattagtaag
tttgacaagcttccagtaaagatcgtgcagaagaatgacccgtttgtggtggactgctct
gataagcttgggcgcgtgcaggagtttgacagcggcctgctgcactggcggattggtggg
ggcgacaccactgagcatatccagacccactttgagagcaagacagagctgctgccttcc
cggcctcatgtgccctgcccaccagtccctcggaagtatgtcacagcagtagagggcaca
ccagggacaacagagcaggagggccccccacccgatggccctccagagaaacggatcacg
gccactatggatgacgtgttgtccacgcggtctagcacactgaccgaggagggagctaag
agtgtagaggcctccaaggaaagcagcaagtttccattcggcatcagcccagcgcagagc
catcggaacatcaagatcctagaggatgaaccccacagtaaagatgagacgccactgtgt
acccttctggactggcaggattcccttgccaaacgctgcatctgtgtctccaacaccatc
cgaagcctgtcgtttgtgccaggcaacgactttgagatgtccaaacacccggggctgctg
ctgatcctgggcaagctgatccttctgcaccacaagcacccagaacggaagcaggcacca
ctaacttacgagaaggaggaggagcaggaccaaggggtgagctgcaacaaagtggagtgg
tggtgggactgcttggagatgcttcgggaaaacaccttggtcacgctcgccaacatctcg
gggcagctggacctctccccgtaccccgagagcatttgcctgcctgtcctggacggactc
ctacactgggcagtctgcccttccgctgaggcccaggaccccttctccaccctgggcccc
aacgccgtcctctccccccagagactggtcttggaaaccctcagcaaactcagcatccag
gacaacaatgtggacctgatcctggccacgccccccttcagccgcctggagaagttgtat
agcaccatggtgcgcttcctcagtgaccgaaagaacccagtgtgccgggagatggctgta
gtactgctggccaacctggcacagggcgacagcctggcagcccgtgccatcgcagtgcag
aagggcagcatcggcaacctcctgggcttcctggaggacagccttgctgccacacagttc
cagcagagccaggccagcctgctccacatgcagaacccgccctttgagccgaccagtgtg
gacatgatgcgacgggctgcccgtgcgctgctggccctggccaaggtggacgagaaccac
tcggagttcacgctgtatgagtcacggctgttggacatctcggtatcaccgctgatgaac
tcactggtttcacaagtcatttgtgatgtactgtttttgattggccagtcatga
DBGET
integrated database retrieval system
