Bubalus bubalis (water buffalo): 102397012
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Entry
102397012 CDS
T05912
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04140
Autophagy - animal
bbub04148
Efferocytosis
bbub05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102397012 (VPS39)
04148 Efferocytosis
102397012 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102397012 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bbub04131
]
102397012 (VPS39)
Membrane trafficking [BR:
bbub04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
102397012 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Lgl_C
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
102397012
NCBI-ProteinID:
XP_006066271
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All DBs
Position
11:65709927..65756885
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGANKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEYRRKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccagtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggctgcttgttggaacaaaacaaggtcatcttcttctctat
aggattcggaaagacgttggttgcaacaggtttgaagtgacattagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtctcccagtttaagattctggtcagc
ttgttagaaaataatatttacgtccatgacctgttgacatttcaacaaatcactacggtt
tccaaggcaaagggagcatcattgttcacatgtgaccttcagcacacagagactggggag
gaggtgttgcggatgtgtgtggccgtgaaaaagaagctgcagctctatttctggaaagac
agggaatttcatgagttgcagggggactttagtgtaccggatgtgcccaagtccatggca
tggtgcgaaaattcaatctgtgtgggcttcaagagagactactacctaataagggtggat
ggaaagggggccaacaaagagctcttcccaacaggaaaacagctggaacccttagttgca
cctctggcggatggaaaagtagctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacgcagaagtgtgccctgaactggacagacatcccagtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgtggaaatccgaacatttgag
ccgaggcttctggtccagagcattgaactgcaaagaccccgtttcattacttcgggcgga
tcaaacattatctatgtggccagtaatcactttgtctggagactcattccagtccccatg
gcgacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagcttgca
gaaatgaaagatgattccgacagtgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgtttcgatgagtccatgcaggtctttgctaaa
cttggcacagatcctacccatgtgatgggcctgtacccagacctgctgcccacagactac
aggaagcagctgcagtatcctaacccactgcctgtgctgtctggggctgagctggagaag
gctcacttagctctgattgactacctgacgcagaaacgcagccaattggtaaagaagctg
aatgactccgatcaccagtctagcacctcccctctcatggaagggactcctaccatcaaa
tccaagaaaaagctgctgcagatcattgacaccaccctgctcaagtgctaccttcacacg
aacgtggccctggtggcccccttgctgcgtctggagaacaatcactgccacatcgaagag
agcgagcacgtgctgaagaaggctcacaagtacagcgagctgatcatcctgtatgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaaaaaagcaaattcc
cctctgaaaggccatgagcggacagtacagtacctgcaacatctgggcacagaaaatctg
catttaattttttcctactcagtgtgggtgctgagagactttccagaggatggtctgaag
atatttactgaggacctcccagaggtggagtctctgccacgagaccgagtgctgggcttc
ttagtggagaattttaagggtctggctattccttatctggaacatgtcatccacgtttgg
gaggagactggctctcggttccacaactgcctgatccagttgtactgcgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaagctccagtccctgctggt
gaggaggaaggagagctgggagaataccgacggaagctccttatgttcctggaaatttcc
agctactatgacccaggccggctcatctgtgattttccttttgatggcctcttggaagaa
cgtgctctcctgctgggacgcatggggaaacatgaacaagctctcttcatctacgtccac
gtcctgaaagacacgaggatggctgaagagtactgccacaagcattatgaccaaaacaaa
gatggcaacaaagacgtgtatctgtccctgctccggatgtacctgtcgccccccagcgtg
cactgcctggggccgatcaagctggaactgctggagccacaagccaacctccaggctgcc
ctgcaggtcctggagctgcaccacagcaagctggacaccaccaaggccatcaatctgctg
cccgcgaacactcagattaacgacatacgcatctttctggaaaaggtcttagaagagaat
gcacagaagaaacggttcaaccaagtgctcaagaaccttctccatgcagagttcctgagg
gtccaggaagagcgcatcctgcaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaatagcgcatttgcaagataccccaatggggtg
gtcgtgcattacttctgctccaaagaggtcaacccggctgacacctga
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