Bubalus bubalis (water buffalo): 102397027
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Entry
102397027 CDS
T05912
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
102397027 (TRPA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bbub04040
]
102397027 (TRPA1)
Ion channels [BR:
bbub04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
102397027 (TRPA1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102397027
NCBI-ProteinID:
XP_006047295
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Position
15:46495786..46552330
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AA seq
1119 aa
AA seq
DB search
MRRSLRKMLRPGEKKEPRDFVCLGVEDHKDNSNDFKVVFEGNKCGLQNFVKKQKRFKKYD
DVNASPLHHAAEEGQVELMEMIVNESSCEVLNVMDDYGNTPLHWAAGKNQVESVKFLLRK
GANPNLRNCSMMAPLHVAVQGGYNDVMKVLIEHSSTDVNLEGENGNTALIITCFTDNSEA
MQLLLNKGAKPCKSNKWGCFPIHQAAFSGAKKCMEIILKFGEEHGYSRLSHINFVNSGKA
SPLHMAVQSGDLDMIKMCLDNGAQLDLLEKGKCTALHFAATQGATEIVKLMVSSYSGNSD
IVNEVDGNHETLLHRASLFDHHELADYLISVGADIDITDSEGRSPLLLATASASWNTVNL
LLSKGARVDIKDNLGRNFLHLTVQQPYGLKNLHPGFLQMQHIKELVMDEDNDGCTPLHYA
CRQGVPVSVNNLLNFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDL
HGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASLGGYTQTMKVILDTNLKC
TDRLDEEGNTALHFAAREGHAKAVSLLLSYDADVVLNKQQASFLHVAIHNKRKEVVLTTI
RNKRWGECFKVFNHCSPTNRCPVIELVEYLPECMKVLLDFCVMPSTEDKSSQDYHIEYNF
TYLQCPLEFTKKGTPVQDIVYEPLLTLNAMVQHNRIELLNHPVCKEYLLMKWLAYGFRAH
VLNLGSYCLGLFPMTFLIVSIRPGMAFNSTGIINETSDHSEILDTKNSYAINFCMILVLL
SSILGYCKEVAQIFQQKRNYFLDKDNAAEWIIYTTSIIFVSPLFIRIPAYVQWQCGAVAI
FLYWMNFLLYLQRFEKCGIFIVMLEVIMKTLLKSTIVFVFLLVAFGLCFYVLLNIQDAFS
SPFLSIIQTFSMMLGDINYHDAFLEPYLKNELEYPLLSFVHLIIFTMFVPIVLMNLLIGL
AVGDIAEVQKHALLKRIAMQVELHTSLEKKLPLWFLHKVDQKSIIVYPNRPRYSRGILRG
VFHYIFCPHETRQEIPNVDTSLETEIMKQKYRLKDLSSLLEKQHELIKLIIQKMEIISET
EDEDYHSSFQDRFKKQQLEQRNSKWNCVLRAVKAKTHSP
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgaagcctgaggaagatgctgcgccccggggagaagaaggagccccgggacttc
gtctgcctgggcgtggaggaccacaaggacaacagcaatgacttcaaggtggtgttcgag
ggaaacaaatgcggtttacaaaactttgtgaagaaacaaaagagatttaaaaaatatgat
gatgtgaatgcctcgcctttgcaccatgctgcagaagaaggtcaagtggagctgatggag
atgattgtcaatgaatcctcctgtgaagtactgaatgtgatggatgattatggaaatacc
ccgctgcactgggccgcaggaaaaaaccaggtggaaagtgttaagtttcttcttcgcaaa
ggagccaacccaaacctccgaaactgcagcatgatggccccactgcatgtggctgtgcag
ggcgggtacaacgacgtgatgaaggtcttgattgagcacagcagtactgatgttaatctg
gaaggagaaaatggaaacacagctctgataatcacatgtttcacagataacagtgaagcc
atgcagcttttgttaaataaaggggctaagccatgtaaatcaaataaatgggggtgcttc
cctattcaccaggcagcattttcaggtgccaaaaaatgcatggaaataatattaaagttt
ggtgaggaacatgggtatagcagactgtctcacattaactttgtgaacagtgggaaagcc
agtcctctccacatggcagttcaaagtggggacttggacatgattaaaatgtgcctggac
aatggtgcacagctggacctgctagagaaagggaagtgcacagcccttcattttgctgcc
acccagggagccactgagattgttaagctgatggtatcttcctattctggcaacagcgat
attgttaatgaggtggatggaaatcacgagacactgcttcacagagcctcattatttgat
caccatgaactagctgactacttaatttcagtgggagcagatattgatatcaccgattct
gaaggacggtctccacttctattagcaactgcttctgcatcctggaatactgtaaatttg
ctcctctctaaaggtgcccgtgtggacataaaagataatcttggacgtaattttttgcat
ttgactgttcaacagccttatggattaaaaaatttgcatcctgggtttttgcagatgcaa
catataaaagagctggtgatggacgaagacaatgatgggtgcacccctctgcactatgca
tgtcgacagggggtccctgtctctgtaaacaacctcctcaactttaatgtgtccattcat
tccaaaagcaaagataagaaatcacccctgcattttgcagccagttatgggcgtatcaat
acctgtcagaggctcctgcaagacataagtgacacgaggcttttgaatgaaggtgatctg
cacggaatgactcctctccacctggctgcaaagaacgggcatgataaagttgttcagctg
cttctgaaaaagggcgcattatttctcagtgaccacaatggctggactgctttgcatcat
gcttccttgggcgggtatactcagaccatgaaggttattcttgacactaacttgaaatgc
acagatcggctagatgaagaagggaacaccgcgcttcactttgcggcgagggagggccat
gccaaagccgtctccctgctcctgagctatgatgccgatgtggtcctgaacaagcagcag
gcctccttcctgcacgttgcaatccacaataagagaaaggaggtggtcctcacgaccatc
aggaacaaaagatggggagaatgtttcaaggtttttaatcattgttctcctaccaataga
tgtccagttatagaactggtagaatacctccctgaatgcatgaaagtacttttagatttt
tgtgtgatgccttccacagaagacaagtcctcccaagactaccatatcgagtataatttc
acatatcttcagtgtccattagaattcaccaaaaaaggaacacctgtacaggacatcgta
tatgagcctcttttaactctcaatgcaatggtgcaacataaccgcatagagcttctcaac
caccctgtgtgtaaagaatacttacttatgaaatggttggcttatgggtttagagcccat
gttttgaacctaggatcttactgtcttggtctgtttcccatgacctttcttattgtcagt
atcagaccaggtatggctttcaactcaactggaatcatcaatgaaactagtgaccattca
gaaattttagacaccaagaattcctatgctataaatttctgtatgattttagttttgcta
tcaagtatattaggatactgcaaagaagtggcccaaattttccaacagaaaaggaattac
tttttggataaggacaacgcagctgaatggatcatctacacaaccagcatcatatttgtg
tcacccttgttcatcaggataccagcatatgtgcagtggcagtgtggagcagttgctatt
ttcctctattggatgaacttcttattgtatcttcagagatttgaaaagtgtggaattttt
atcgtgatgttggaggtgatcatgaaaactctgttgaaatcgacaattgtgtttgtcttc
cttcttgtggcttttggactctgcttttacgtgctcctgaatatccaggatgctttcagc
tctccgttcctttctataatccagacctttagcatgatgctaggagacatcaattatcat
gatgccttcctagagccatatttgaagaatgaattggagtatccacttctctcctttgta
caccttatcatattcaccatgttcgtcccaattgtcctcatgaatttacttattggtttg
gcagttggtgacattgctgaggtccagaaacatgcactgttgaagagaattgccatgcag
gtggaacttcacaccagcttggagaagaagctgccgctctggttcctacacaaagttgat
cagaaatccatcatcgtgtatcccaacagacccagatacagcagagggatattacgtggt
gtatttcattatatcttttgcccccatgaaacaagacaagaaataccaaatgttgataca
tctttagaaacagaaataatgaaacaaaagtaccggctgaaggatctcagttctcttctg
gaaaaacagcatgagcttattaaactcatcattcagaagatggaaatcatctctgagaca
gaggatgaagattaccacagttcttttcaagacaggtttaagaaacagcagttagaacaa
aggaatagcaaatggaattgtgtattgagggcagtaaaggcaaaaacacacagcccttaa
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