Bubalus bubalis (water buffalo): 102397881
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Entry
102397881 CDS
T05912
Symbol
XNDC1N
Name
(RefSeq) putative short transient receptor potential channel 2-like protein
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bbub04040
]
102397881 (XNDC1N)
Ion channels [BR:
bbub04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
102397881 (XNDC1N)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRCC1_N
TRP_2
Ion_trans
PKD_channel
Ank_2
YVC1_C
Ank
Motif
Other DBs
NCBI-GeneID:
102397881
NCBI-ProteinID:
XP_006064796
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Position
16:33302564..33339046
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AA seq
1259 aa
AA seq
DB search
MAPVRISHVVSFSSQDPKYPVENLLNPDSQRGPWLSCPQDKSGQLKVELQLERAVPIGYI
DVGNCGCAFLQIDVGRSSWSLDRPFVTLLPATMLMSLADSKQGKNRSGVRMFKDADFLAP
ASSESWDRLRLSCSQPFTRHQPFGLAFLRVCSSLDSLDDPVEGPSVPVSSGLSQGSSDAQ
ESGPSPWLANPSIRRTFFPDPQTTTKEISELKNFLKQLQPGTLGRSACMVLSAAHRAPPA
RVANPKTNHSEPGPTHQDSTEPRSEEQNTEKDVGRTKRRKVGGRRPVSNSNTRPNQRGLA
KAGQKEHLRRSSRVQEHGWCPICAGSFSIDLLPQHAATCGGASPPPPASPASSPSSSPHV
LRFRCVALTPVPLVSRPQPNWTEIVNRKLKFPAPLLGAIQEGHTGLVQQLLEVGVEAPGG
GPGGPPRNVEEAEDRSWREALNLAIHLGHEAITDMLLANVKFDFRQIHEALLVAVDTNQP
AVVRHLLARLEREKGRKVDTRSSSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLM
GQGHTIPRPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASEDAMLAAFQ
LSRELRHLARKEPEFKPEYIALESLSQDYGFELLGMCRNQSEVTAVLNDLGEDNETEPEA
EGLGQAFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTTIWKLFV
AFLIFLTMPFLCLGYWLAPKSRLGRLLKIPVLKFLLHSASYLWFLIFLLGESLVMEKQLS
TFRGRSQSVWETSLHMVWVAGFLWFECKEVWIEGLRSYLLDWWNFLDMVILSLYLAAFTL
RLLLAGLAHKHCQDAPDGAACHYFTSAERSEWRTEDPQFLAEVLFAVTSMLSFTRLASIL
PAHESLGTLQISMGRMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGNFNETFQF
LFWTMFGMEEHSVVDMPQFLVPEFVGRALYGIFTIVMVIVLLNMLIAMITNSFQKIEDAA
DVEWKFARSKLYLSYFREGLTLPVPFNILPSPKAIFYLLRRVFRFICCCHFCCKTKKPDY
PPVPTFANPGAGAGPGEGERGSYRLRVIKALVQRYIETAQREFEETRRKDLGNRLTELTK
TVSRLQSEVAGVQRAVVEAGPRRPPGGASVLSRYITRVRNSFQNLGPPIPETPELTVPAT
VGTQESSETGLPDAGGAQAPASGESGPSSPAHVLVHREQESEGAGDLPQEADLGAKEGT
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggctccagtgaggattagccacgtggtgtcattctcctctcaggatcccaaatatcca
gtggagaatttgctgaacccagacagtcagaggggaccttggctcagctgtcctcaggac
aagagtgggcaactgaaagtggagctgcagctggagagggcagtgcccattggctacatt
gatgtgggtaactgtggttgtgctttcctgcaaattgacgtgggtcgttcctcctggtcc
ctggacagacctttcgtcaccctgctccctgcaaccatgctgatgtccctggctgattca
aagcagggaaaaaaccgctcaggggtgcgcatgtttaaagatgctgacttcctggcccca
gcctcaagtgagtcatgggatcgacttcgcctgagctgctcccaacccttcacacgtcat
cagccctttggcctggccttcctgcgggtgtgttcctctctggactccttagatgaccct
gtggagggtccctcggtccctgtgagctcagggctgagccagggctcttctgatgctcag
gagtctggtcccagcccctggctggctaatccttccatccggaggacattcttcccggat
ccccaaacgaccaccaaggaaatctcagagctcaagaatttcctaaagcaactgcagccg
gggactctggggcgttcagcctgcatggtactttcagctgcccacagggcacctccagcc
cgtgtggcaaaccctaaaaccaaccattcagaaccaggtcccactcatcaggacagcaca
gagcccagatcagaggagcagaacacagagaaggacgtgggcaggacgaagaggaggaaa
gtgggaggccgcaggcctgtatccaactcaaacactcggccaaaccagcgggggctagca
aaggcaggccagaaagaacacctgcggcgaagcagcagagtccaggagcatgggtggtgc
cccatttgtgcaggctccttcagcattgacctgcttccccagcacgctgccacttgtgga
ggggcctccccgcctcccccagcctctcccgcctcgtcaccatcttcgtctccgcacgta
ctaaggtttcgttgtgtggcactaacaccagttcccctggtctccaggcctcagcctaac
tggacagagatcgtgaacagaaagctgaagttccccgctccgctgctgggtgccatccag
gagggacatacaggcctggtgcagcagctgctggaggtgggggtcgaggccccgggcggc
gggccaggcgggcccccccggaatgtggaggaggccgaggaccgctcctggagggaggcc
ctcaatctggccatccacctgggccacgaggccatcactgatatgctgctggccaatgtc
aagttcgacttccgccagatccatgaggccctgctggttgctgtggacacaaaccaaccc
gcagtggtgcgtcacctgctggcccggctggaacgcgagaagggccgcaaggtggacacc
aggtcttcctcactggctttctttgactcgtcgatcgatggctcccgcttcgcccctggg
gtcacacccctcaccctggcctgccagaaggacctgtatgagatcgcccagctgctcatg
ggccagggtcacaccatcccacggccacaccccgtctcctgcgcctgcctcgagtgcagc
aacgcgcgccgctacgacctgctcaagttctcgctgtctcgcatcaacacctaccgcggc
atcgccagccgcgcccatctctcgctggccagcgaggacgccatgctcgcggccttccag
ctcagccgcgagctccggcacctagcccgcaaggagcctgagtttaagcccgagtacatt
gccctggagtcgctgagccaggactatggctttgaactgctgggcatgtgccggaaccag
agtgaggtcaccgcagtgctcaatgacctgggcgaggacaacgagactgagcccgaggcc
gagggtctgggccaggcctttgaggaaggcatccccaacctggcgaggctgcgactggcc
gtcaactacaaccagaagcggtttgtagcacaccccatctgccagcaagtcctgtcctcc
atctggtgtgggaacctggctggctggcgtgggagcaccaccatctggaagctcttcgtt
gccttcctcatcttcctcaccatgcccttcctctgccttggctactggctggcacccaag
tcccggcttggccgcctgctgaagatcccggtgctgaagttcctgctgcactcggcctcc
tatctgtggttcctcatcttcctgctgggagagtccctggtcatggagaaacagctgagt
accttccgaggccgcagccagagtgtctgggagacttcactacacatggtttgggttgca
ggcttcctgtggtttgagtgtaaggaagtgtggatcgagggcctgcgcagttacctcctg
gactggtggaacttcctggatatggtcatcctctccttgtacctggcggccttcacgctg
cgcctcctcctggccgggcttgcacacaagcactgccaggatgcccctgatggggctgcc
tgccactacttcacctcggctgaacggagtgagtggcgcacggaggacccccagttcctg
gctgaggtgctcttcgctgtcaccagcatgctcagcttcacccgcctggcctccatcctg
ccagcccatgagtcgctgggcaccctgcagatttccatgggcaggatgattgatgacatg
atccggttcatgttcatcctcatgatcatcctgaccgccttcctctgcggcctcaacaac
atctacgtgccttaccaggagactgagcggctgggcaatttcaatgagaccttccagttt
ctgttttggacgatgtttggcatggaggagcacagtgtggtggacatgcctcagtttctg
gtgccggaattcgtgggccgggccctctatggcatctttaccatcgtcatggtgattgtg
ctgctcaacatgctcattgccatgatcaccaactcattccagaagattgaggacgctgct
gacgtggagtggaagtttgctcgctcaaaactctacctgtcctacttccgagagggcctg
acattgcctgtgccattcaatatcctgccctcccccaaggccatcttctacctgctcagg
agagttttccgcttcatttgctgttgccacttctgctgcaaaaccaagaagccagactat
cccccagtccccacctttgccaatcctggggcaggggcagggccaggggagggagagcgt
ggatcctaccggcttcgggtcatcaaggcgctggtgcaacgctacatagagactgcccag
cgggagtttgaggagactcgtcggaaagacctgggcaacagactgacagagctcaccaag
acggtgtctcgactgcagagtgaggtagcaggtgtgcagcgggctgtggtggaggcaggg
ccacgccggccgcccggaggagccagcgtcctcagtcgctacatcacccgagtgcgcaac
agcttccagaacctggggccccccatccctgagaccccggagctgacagtgccagcgaca
gtggggacccaggagtcatcagaaacagggcttccagatgctggaggggctcaggctcca
gcctctggggaatctggcccctcctccccagctcacgtgttagtgcacagggagcaagaa
tcagagggggctggggacctgccccaggaggcagacctgggagccaaggaggggacctga
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