Bubalus bubalis (water buffalo): 102398300
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Entry
102398300 CDS
T05912
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03082
ATP-dependent chromatin remodeling
bbub04714
Thermogenesis
bbub05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102398300 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102398300 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102398300 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102398300 (SMARCC1)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102398300 (SMARCC1)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102398300 (SMARCC1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102398300 (SMARCC1)
PBAF complex
102398300 (SMARCC1)
GBAF(ncBAF) complex
102398300 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
Chromo
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
102398300
NCBI-ProteinID:
XP_025128176
LinkDB
All DBs
Position
21:51812489..51937235
Genome browser
AA seq
1105 aa
AA seq
DB search
MAAAAGGGGLGTTTGTAGAGGAAAATGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLG
KHYKKYVHTDAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLARPNIYLIPDIDLKL
TNKLKDIIKRHQGTFTDEKSKASHHVYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPGKGDQSRSLDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQIPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEK
METDTDAQQPEKAENKGENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKEAEENKE
LTDSCKERESDVGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGPNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMMPGQPMPGRMMPTVAASIHPTGSGPTPPGMPPIPGNILGPRVPLTAPNGMYPPPPQQ
QPPPPAPADGGPPPPAPGPPASAAP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcggagggctggggacgacgaccggcaccgcgggcgcagga
ggcgcggcggcggccacgggcctggccgtttatcggcggaaggacggaggcccggcgagc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcacacggatgctcctaccaataaaacactggctgggctg
gtggtacagcttcttcagttccaggaagatgcctttgggaagcatgtcaccaacccggcc
ttcaccaagctcccggcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaaatacaaaaatgaacagggatggcggaggtttgatctgcag
aatccatcccgaatggatcgtaatgttgaaatgtttatgaacattgaaaaaacattggtt
cagagcaattgtctggccagacccaacatctacctcattccagacattgatctgaagttg
actaacaaattgaaagatataatcaaacgacatcagggaacatttactgatgagaagtca
aaagcttcccaccacgtttatccatatccttcctcacaagaggatgaagagtggttgaga
cctgtgatgagaaaagacaagcaggtgttagtgcactgggggttttaccctgacagctat
gatacttgggtccatagtaatgatgttgatgcagaaattgaagatccaccgattccagaa
aaaccatggaaggttcatgcaaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcccgtgagttttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagatagaaaagcatcagct
aatgctcgaaagaggaaacattcaccttcccctccgccccccacacccacagaatcccgg
aagaagagtgggaagaaaggccaagctagtctttatgggaagcggagaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaacata
gaggaagtggttcttccaaaaaatgtaaacccaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtggcagatctagatgagcaggatgaagaaacagtcacgacaggagga
aaggaagatgaagatcctggcaaaggtgatcagagtagatcccttgaccctggtgaagat
aatgtgactgagcagaccaatcacattattattcctagctatgcatcgtggtttgattat
aactgtattcatgtgattgaacggcgtgctcttcctgagtttttcaatggaaaaaacaaa
tccaagaccccagagatatacttggcatatcgaaatttcatgattgacacataccgccta
aatccccaagaatatttaaccagcactgcttgtcggaggaacttaactggagatgtgtgt
gctgtgatgagggttcatgcctttttagaacagtgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggcaatggggcctcctccaactcctcatttcaatgtgttagct
gataccccctcggggcttgttcctctacatcttcgatcacctcagattcctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacatctactccaagaaaaccttagcaaagagtaaaggtgctagtgctgga
agagaatggactgaacaggagactctgctactcttggaggctctggagatgtataaggat
gattggaacaaagtgtcagagcacgttggaagtcgcactcaggatgaatgcatccttcac
ttcttgaggcttcccattgaggacccataccttgagaattctgatgcttcactggggccc
ctggcctaccagcctgtccccttcagtcagtcaggaaacccagtcatgagcacggttgct
tttttggcatctgtggtggatcctcgtgtggcgtctgctgcagccaaagcagctttggag
gagttttctcgggtccgggaggaggtgcccctggaattggtggaggctcatgtcaagaaa
gttcaagaagcagcccgagcctccggaaaggtggatcccacctatggcctggagagcagc
tgcattgcaggcacagggccagatgagccagagaagctggaaggagctgaagaggaaaaa
atggaaacagatactgatgctcagcagcctgaaaaggcagaaaacaaaggggaaaatgaa
acggatgaaggtgataaagcacaagacggagaaaatgaaaaaaacagtgaaaaggaacag
gatagtgaagttagtgaggataccaaatcagaagaaaaggaggctgaagagaacaaggaa
ctcactgattcttgtaaagaaagagaaagtgatgttgggaagaagaaagtagaacatgaa
atttctgaaggaaacgtagccacggccgcagcagctgctcttgcctcagctgcaacgaaa
gccaagcacctggctgccgtggaagagaggaagatcaagtctctggtagctcttctggtt
gagacacaaatgaagaaactggagattaaacttcgacattttgaagaactagaaactatc
atggacagagagaaagaagctttagaacaacagaggcagcagttgcttacagagcgccag
aacttccacatggagcagctgaaatacgctgagttgcgagcccgacagcaaatggaacag
cagcagcatgggccgaaccctcaacaggcacaccagcactcaggaggacccggcctggcg
ccgctgggagcagcaggacatcccggcatgatgcctcatcagcagccccctccctaccct
ctgatgcaccaccagatgccaccgcctcatccaccccagccaggtcagataccaggccca
ggttccatgatgcctgggcagcccatgccaggccgcatgatgcctaccgttgcagccagc
atccaccccactgggagtggccccacccctcctggtatgcctccaatcccaggaaacatc
ttaggaccccgggtacccctcacggcacctaacggcatgtatccccctccgccacagcag
cagccaccacctccagcacctgcggacggaggccctccgcctcccgctcctggcccacca
gcctcagctgcgccctag
DBGET
integrated database retrieval system
