Bubalus bubalis (water buffalo): 102398727
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Entry
102398727 CDS
T05912
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bbub03009
]
102398727 (IGHMBP2)
03012 Translation factors [BR:
bbub03012
]
102398727 (IGHMBP2)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102398727 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
102398727 (IGHMBP2)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Other ribosome biogenesis factors
102398727 (IGHMBP2)
Translation factors [BR:
bbub03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102398727 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
Helicase_RecD
nSTAND3
AAA_22
UvrD-helicase
AAA_16
AAA_25
SLFN-g3_helicase
PhoH
Flavi_DEAD
IstB_IS21
AAA
Zot
DnaB_C
AAA_18
NPHP3_N
UvrD_C_2
ATPase
ABC_tran
VWA_2
AAA_31
NTPase_1
Motif
Other DBs
NCBI-GeneID:
102398727
NCBI-ProteinID:
XP_006064015
LinkDB
All DBs
Position
5:127738853..127764193
Genome browser
AA seq
981 aa
AA seq
DB search
MASTPVESFVTKQLELLELERDAEVEERRSWQENVSLKELQSRGVCLLKLQVSSQRTGLY
GRLLITLEPRRCVSAAVLPSNSFTSGDIVGLYDESGQLATGILTRITQKAVTVAFDESHD
SQLSLDQEHSYRLLKLANDVTYKRLKKALISLKKYHSGPASSLIEVLFGASDPSPPSKMP
PLTFCNPALDASQQEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKRGSKVLCCAP
SNVAVDNLVERLAQWKQRILRLGHPARLLDSIQQHSLDAVLARSDGARVVADIRRDIDQA
WAKNRKTQDKREKSNFRDEIKLLRKELKDREEAAMLESLAAASVVLATNTGASADGPLKL
LPDSHFDMVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIVSHKAALEGLSLSLM
ERLAERHGAGALRMLTVQYRMHQAIARWASEALYHGQLTAHPSVAGHLLRDLPGVAATEE
TGVPLLLVDTAGCGLLELEEDDEQSKGNSGEVRLVGLHVQALVDAGVRAADIAVITPYNL
QVDLLRQSLAHRLPELEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVVCDSRTVSNHAFLKTLVDYLTEHGEVRTAFEYLDDIVPENYSHEGAQAGGKPR
GSAATARRAPGGTGPGRKKPSRAPLGSSEPQPQPSLDGGGGWEGAGSRDGADGFRATIAE
FVASEKTQLEFPASLKPHDRLRVHQIAEEFGLRHDSTGKGRERFITVSKRPPPTPEAPPT
PAGPDGRAPLRPETPSSKQPEPPVGESSGRDQPDLKALHLERLQRAGAQQEQWAREGPCA
PGPAPRKLPEKKKKKDARGPVAIELPAEEDFDALVSAAIKADNTCGFAKCAASVVTLGQL
CLHCGRRYCLSHQLPEVHGCGERARAHARQRISREGVLYPGSGTKDRSLDPAKRAQLQRR
LDKKLDELTGQRRSKRKEKGK
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgacacctgtggagagcttcgtgaccaagcagttggaactgctggagctcgag
agagacgcggaggtcgaggagcgcagatcctggcaggaaaatgtctctctgaaggaactc
cagagccgaggcgtctgtttgctgaagctgcaggtatccagccagcggaccgggctgtac
ggacggctgctcattaccctcgagcccaggagatgcgtatctgcagctgtgcttcctagt
aacagctttacttctggtgacatcgtgggtctgtatgacgaaagtggtcagctggccact
gggatcctgacccgcatcacccagaaagcggtcaccgtggcctttgatgagtcccacgat
tcccagctgagtttggaccaagagcattcctacagattgttgaagcttgccaacgacgtg
acttacaagcgactgaaaaaagctctgatttccctaaagaagtatcactctggccccgca
tcctcactcatagaggtcctctttggcgcatcagaccccagtcctcccagcaagatgccc
ccgctgaccttctgcaaccccgccctggacgcctcccagcaggaagcggtcctgttcgcg
ctatcccagaaggaacttgccatcatccacgggcccccgggcactgggaagaccaccacc
gtggtggagatcatccttcaagctgtgaaacggggctcaaaggttctgtgctgcgcaccc
tctaatgtcgctgtggacaacttggtggagcggctggcccagtggaagcagaggattctc
cgcctcggccacccagcccgcctcctggactccatccagcagcactcgctggacgcggtc
ttagcacgcagcgacggcgcccgggtcgtggccgacatcaggagggacatcgaccaggcc
tgggcgaaaaacagaaagacccaggataagagagagaagagtaattttcgagatgaaatc
aagctgctgaggaaggagctgaaggacagggaggaggcagccatgctggagagcctggcg
gcggccagtgtggtcctcgccacaaacacgggcgcctctgcggatggcccgctgaagctg
ctgcccgacagccactttgacatggtggtcatcgacgagtgtgcccaggccctggaagcc
agctgctggatccccctgctgaaggcccggaagtgcatcctggccggagaccacaagcag
ctgccccccaccatcgtctcccacaaggctgcgctggaggggctgtcgctcagcctgatg
gagcgcctggcggagcggcacggagccggggcgctgcggatgctgacggtgcagtaccgc
atgcaccaggccattgcgcgctgggcctcggaggccctgtaccacgggcagctcaccgcc
cacccttccgtggctgggcacctcctgagggacctcccgggcgtggcggccaccgaggag
acaggcgtgcccctgctgctggtggacacagctggctgtgggctgctggagctggaggag
gatgatgagcagtccaaaggaaactccggtgaagtgcgcctcgtcggcctgcacgtccag
gcgctggtggatgcgggtgtccgggccgccgacattgccgttatcacgccgtacaacctg
caggtggacctgctcagacagagcctcgcgcacaggctcccggagcttgagataaggtcc
gtcgacggcttccagggccgggagaaggaggctgtgatcctgtccttcgtcagatccaac
aggaaaggtgaggtgggcttcctcgccgaggaccggcgcatcaacgtggcggtcacccgc
gcacggcgccacgtggccgtggtctgtgactcccgcaccgtcagcaaccacgccttcctg
aagaccctggtggactacctcacggagcacggcgaggtgcgcacggcctttgagtatctt
gacgacatcgtccccgagaactactcccacgagggtgcccaggcaggcgggaagccccgg
ggctctgctgcgacagccaggagggcccctggggggaccgggccgggccggaagaagccg
agcagggcgcccttgggctcctccgagccgcagcctcagcccagcctcgatggaggcggc
ggctgggagggcgctgggagcagagacggcgcagacggcttcagggccacgattgcggag
ttcgtggcgagtgagaagacgcagctggagttccctgcctccctgaaaccgcacgacagg
ttgcgggtccaccagatcgcggaggagttcgggctgaggcatgacagcaccgggaagggg
agggaacgcttcatcacggtgagcaaaaggcccccgcccacccccgaggcgccgcccacc
cccgcggggcccgatggcagagcccctctgcgtccagagacccccagctccaagcagcca
gagccccctgtcggggagtcgagcggccgggaccagccggacctgaaggcgctgcacctg
gagagactgcagagggcgggggcccagcaggagcagtgggccagggaggggccctgcgcc
ccgggccccgcgccccggaagttaccggaaaagaagaagaagaaagatgcgagaggcccc
gtggccatagagctgcccgccgaggaggactttgatgccctggtctcggctgccatcaag
gcggacaacacctgcggcttcgccaagtgcgcggccagcgtcgtgaccctgggccagctc
tgcttgcactgcggccgccgctactgcctcagccaccagctgcccgaggtccatggttgt
ggggagagggctcgcgcccacgctcggcagaggatcagccgggaaggggtcctctacccc
ggcagtgggaccaaggacaggtccctggaccccgccaagcgggcccagctgcagaggagg
ctggacaagaagctggacgaactgaccggccagaggcggagcaagaggaaggagaagggc
aagtga
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