Bubalus bubalis (water buffalo): 102398971
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Entry
102398971 CDS
T05912
Symbol
TRMT13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog isoform X5
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbub03016
]
102398971 (TRMT13)
Enzymes [BR:
bbub01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
102398971 (TRMT13)
Transfer RNA biogenesis [BR:
bbub03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
102398971 (TRMT13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Insulin
Motif
Other DBs
NCBI-GeneID:
102398971
NCBI-ProteinID:
XP_006049855
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Position
6:complement(43218589..43237879)
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AA seq
425 aa
AA seq
DB search
MAAAALTPHGTAFPEEGRCGYFVEKKKRFCRMVVAAGKRFCGEHAGASEEENARKRILCP
LDPKHTVYEDQLAKHLKKCNSREKPKPDFFIQDINAGLKDETEIPDQLVPISSLSEEQLE
NLIKKLRKASEGLNCTLKDQIMSHPALHDALNDPKNGDSAAKHLKQQVDGKHRKKNSVFE
RLQIDIQHLCLNKIPLLSKEKLPVVGIGKHLCGVATDLALRCLVETYAASCEERNEEPLA
KRIKNDKTEKEINTLAKEGNEKKTPEKRSPVAGIVIALCCHHRCDWRHYVGKEYFRALGL
GAVDFHYFQRMSSWATCGMRKTTLEASNSSTKRRDKQNDGSEEHDDGGYRITDDSPEGLP
GFLTVEEKKKIGHLCKLLIDQGRIKYLQQKGFSPALQYYIDPLVSLENVLLTALPNHSSS
PEASV
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgctgcgctgacgccgcatggaactgcctttccagaagaggggcgatgcggt
tattttgtggaaaagaagaagcggttctgcaggatggtggtggcagccggaaaaaggttc
tgtggtgaacacgctggagcctcggaggaagaaaatgctcggaaaagaattctgtgtcct
ttagatccaaaacacacagtatatgaagatcaactagcaaagcatctgaaaaagtgtaac
tcaagagagaagccgaaacctgacttctttattcaagatattaatgcaggtttaaaagat
gaaactgaaataccagatcaattagttccaatttcgtctctctctgaagagcagctggaa
aacttaattaagaaattgagaaaagcaagtgaaggtttgaactgcacacttaaagatcaa
attatgtcccatccagcattgcatgatgcccttaatgaccctaaaaatggtgattctgca
gccaaacatctgaaacagcaggtagatggcaaacacagaaagaaaaattcagtgtttgaa
agacttcaaattgatattcaacatttgtgtttgaacaagattcctttgctaagcaaagaa
aaactacctgttgtaggaattggaaagcatctgtgtggtgtggcaacagatcttgcatta
cgatgtttggttgaaacctatgctgccagttgtgaggaaaggaatgaagaacctttagcc
aaacgcataaagaatgataaaacagaaaaagaaattaacactttggccaaggaaggaaat
gaaaaaaaaaccccagagaagcggagccctgtggctggcattgttattgcgctctgttgt
caccacaggtgtgattggagacattatgtgggcaaagaatatttcagggctctgggcctt
ggagcagtggatttccactatttccagcgaatgagtagttgggcgacttgtgggatgcga
aaaacgactttggaagcttcaaatagttccacaaaaagaagagataaacagaatgatggc
agtgaagagcacgatgatggaggatacagaatcactgatgacagccctgagggtttgcct
gggtttcttactgttgaagaaaagaagaaaatagggcatctttgtaaattgctgattgac
caaggccgaatcaagtatttacagcagaaaggcttcagtcctgctttacagtactatata
gaccctctggtgtctttggaaaatgtgttgttaactgctttaccaaatcattcttcatca
ccagaagcaagtgtttaa
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