Bubalus bubalis (water buffalo): 102399150
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Entry
102399150 CDS
T05912
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X2
KO
K16499
protocadherin delta 2
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bbub04515
]
102399150 (PCDH18)
Cell adhesion molecules [BR:
bbub04515
]
Cadherins
Protocadherins
102399150 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
BBS1
PAH
Syndecan
Cadherin_C_2
TMEM154
MPS-4
DUF3418
Motif
Other DBs
NCBI-GeneID:
102399150
NCBI-ProteinID:
XP_006041326
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All DBs
Position
17:complement(52041531..52055746)
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AA seq
1134 aa
AA seq
DB search
MYQMNAKMHFTFVFALLVVSFNLDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLVKLPN
PSTVRFRAMQRGNTPLLVVNEDNGEISIGAKIDREQLCQKNLNCSIEFDVITLPTEHLQL
FHIEVEVLDINDNSPQFSRSLIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANN
FFNIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSILKISISDSN
DNSPAFEQQSYIIQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIIETFKID
SERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEISINLMS
PGKEEISYIFEGDPIDTFVALVRVQDKDSGLNGETVCKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFAISENNSP
GAYITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQ
ITFVVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALRNNTAEISIPKGAESGFHV
TRIRAIDRDSGVNAELSCSIVAGNEENIFVIDPRSCDIHTNVSMESVPYTEWELSVVIQD
KGNPQLHTKVLLKCVIFEYAESVTSTAMTSVSQAPLDVSMIIIISLGAICAVLLVIMVLF
ATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTVNGTLPIRSHHRSSPS
SSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEVSQLLSMLHQG
QYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGF
SDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQQ
HPHQSLEDDVQPVDSGEKKKSFSTFGKDSPSEEDSGDTSTSSLLSEMSSVFQRLLPASLD
TYSECTEMDRSNSLERRKGPLPAKTLGYPQGVAAWAASTHFQNPTNNSGPPLGTHSSVQP
SSKWLPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASELVAEINKLLQDVRQS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaaatgaatgctaaaatgcactttacgtttgtttttgcactcttggtggtgtct
ttcaacttggatgtgctgggcaagaatttgaaatacaggatttatgaggagcagagggtt
ggatcggtaattgcaagactatcagaggatgtggctgatgtgttagttaagctacctaat
ccttctactgttcgcttccgagccatgcaacggggaaatacgcctctactcgtggtcaat
gaggataacggggaaatcagcataggagcaaaaattgaccgcgagcaactatgccagaaa
aacttgaactgttccatagagtttgatgtgatcactctgcccactgagcatctgcagctt
ttccatattgaagttgaagtgctggatattaatgacaattcgccccagttttcaagatct
ctcatacctattgagatttcagaaagcgcggcagtggggacccgtatccctctggacagt
gcatttgatccagatgttggggaaaattccctccacacgtactctctctctgccaataat
ttttttaatatcgaggttcgaaccaggactgatggagcgaagtatgcagaactcatagtg
gtcagagagctggatagggagctgaagtcaagctatgagcttcagctcaccgcctccgac
atgggggtgcctcagaggtctggctcatccatactaaaaatcagcatttcagactctaat
gacaacagccctgcttttgagcagcagtcttatataatacaactcttagaaaactccccg
gttggcactttgctccttgatctgaatgccactgatccagatgagggcgctaatgggaaa
attgtctattccttcagcagccatgtgtctcccaaaattatagagacttttaagattgat
tcagaaagaggacatttgactcttttcaagcaggtggattatgaaatcaccaaatcctat
gagattgatgttcaggctcaagatttgggtccaaattcaatcccagcacattgcaaaatt
ataattaaggtcgtggatgttaatgataataaacctgaaattagcataaacctcatgtcc
cctggaaaagaagaaatttcttatatttttgaaggggatcctattgatacatttgttgcc
ttggtcagggttcaggacaaggattctgggctgaatggagaaacagtttgtaagcttcat
ggacatggtcactttaaacttcagaagacttatgaaaacaattatttaatcttgacgaat
gccacgctggatagagaaaagagatctgaatacagtttgactgtaatcgctgaggacaag
gggacacccagtctctctacagtaaaacattttactgttcaaatcaatgatataaatgac
aatccaccccacttccagagaagtcgatatgaatttgcaatctcagagaataactcaccc
ggggcatatatcaccaccgttacagccacagatcctgatcttggagaaaatgggcaagtg
acatataccattttggagagttttatcctgggaagttccataactacatatgtcaccatt
gacccatctaatggagccatctacgccctcagaatctttgaccatgaggaggtgagtcag
atcacttttgtggtcgaagcaagagatggtggaagtcctaagcaacttgtaagcaatacc
acagtggtgctcaccatcattgatgaaaatgacaatgtccctgtggttatagggcctgca
ctgcgcaataacaccgcagaaatctccatccccaaaggggctgaaagcggctttcatgtc
acaagaattagggcaattgacagagactctggcgtgaatgcagaactcagctgctccata
gtagcaggtaacgaggagaatatctttgtaattgatccacgatcatgtgacatccatacc
aacgtaagcatggaatctgttccctacacagaatgggagctctcagttgtcatccaggac
aaaggcaatcctcagctgcataccaaagtccttctgaagtgtgtgatctttgaatatgca
gagtcggtgacaagtacagcaatgacctcagtaagccaagcacccttggatgtctccatg
attataatcatttccttaggggcaatttgtgcagtgttgttggttattatggtgctgttt
gcaactaggtgtaaccgagaaaaaaaagacactcgatcctacaactgcagggtagcagaa
tcgacataccagcatcaccccaaaagaccctccaggcagatccacaaaggggacatcaca
ttggtgcctaccgttaatggcaccctgcccatcagatctcatcacaggtcatctccgtct
tcatctcctaccttagaaagagggcaaatgggcagccggcagagtcacaacagtcaccag
tccctcaacagtttggtgaccatctcatcaaaccacgtgccagagaatttctcattagaa
ctcacccatgccacccctgctgttgaggtctcccagcttctttcaatgcttcaccaggga
caatatcagccaaggccaagttttagaggaaacaaatattccaggagctatagatatgcc
cttcaagacatggacaaatttagcttgaaagacagtggccgcggtgacagtgaggcagga
gacagtgattatgatctggggcgagattctccaatagacaggctgctgggtgaaggattc
agtgatctgtttcttacagatggaagaattccagcagctatgaggctgtgcacggaagag
tgcagggtcctgggacactccgaccagtgctggatgccgccgctgccctcaccctcctcg
gattataggagcaacatgttcatccccggggaggaattcccagcgcagccccagcagcag
catccgcaccagagtcttgaggatgacgtgcagcctgtagactctggtgagaagaagaag
agtttttccacgtttgggaaggactccccaagtgaggaggactctggggacaccagcacg
tcctctttgctctcggagatgagcagcgtgttccagcgcctcttgcccgcttctctggac
acctattctgagtgcactgagatggaccggtccaactcactggaacgccggaagggacct
ttgccagccaagactttgggttacccacagggggtggcagcctgggcagccagtacgcat
tttcaaaacccgaccaacaactctgggccgccacttggaactcactccagtgtgcagcct
tcttcaaaatggctgccggccatggaggagatcccggagaattatgaagaggatgatttt
gacaatgtgcttaaccacctcaatgacggcaaacatgaactcatggatgccagtgagcta
gtggctgagattaacaaactgcttcaggatgtccgccagagctag
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