Bubalus bubalis (water buffalo): 102399416
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Entry
102399416 CDS
T05912
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102399416 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102399416 (BARD1)
04121 Ubiquitin system [BR:
bbub04121
]
102399416 (BARD1)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102399416 (BARD1)
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102399416 (BARD1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102399416 (BARD1)
Ubiquitin system [BR:
bbub04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102399416 (BARD1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102399416 (BARD1)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102399416 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4
zf-C3HC4_2
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
102399416
NCBI-ProteinID:
XP_006051467
LinkDB
All DBs
Position
2:complement(155033654..155123843)
Genome browser
AA seq
773 aa
AA seq
DB search
MQGNRQPRVRSGNQPHPAPAMKPAGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGG
CEHIFCSNCVSDCIGSECPVCYTPAWIQDVKINRQLDSMIQLCSKLQNLLHDTDLADLKE
ETSRKSLFNDAESKKNSIKMWFSPRSKKVRYTVSKLSVQTQPSVKNDENAQQTSMYEFVS
TSPPVEVSEGPKKPSTRSRKKQKKKTLAEVNRKWNLEAEKEDGDLDSKEESKEKLVSFCS
QPSVIGDLQINGEIDLLASGSVTESECLDEVFLPLAEHIESPEIESKNEVVTPEKTVSAN
CLPSKKSLSSGHNGKRGRHNRISSPVSKRCRSRSQSAGGNSVKQTVLLENMPLPGCSSPP
SNKLKVDDTLSRTSRTILDESISLSPGTPPSTLNSASYRRMMCSPSATKLWPISHTAVKR
NHRGETLLHIASIKGDIPSVEYLLQSGNDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK
ALVNTTGYQNDSPLHDAVKNGHVDIVKLLLSYGASREAVNIFGLRPVDYADSENMKSVLL
LPEKKESSSTSHCSVVNTGQRRDGPLVLIGSGLSSEQQKMLSELATILKAKKCAEFDSTV
THVIVPGDTVQSTLKCMLGILSGCWILKFEWVKACLQSKECEQEEKYEIPEGPQKSRLNR
EQLLPKLFDGCYFYLGGTFKHHPKDNLIKLVAAGGGQILIRKPKPDSDVTQTINTVAYHA
KPDSDQRFCTQYIIYEDLSNHRPERVRQGKVWMAPSSWFIDCVMSFELLPLDN
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgcaggggaaccggcagccgagggtccgctccgggaaccagcctcatcccgcgcccgcc
atgaagccggccggtcgcggggcctgggcccacagccgcgctgcgcttgaccggctggag
aagctgctgcgctgctcacgctgcactaatattctgagggagcctgtgtgcttaggcgga
tgtgagcacatcttctgtagtaattgtgtaagtgactgcattggaagtgaatgtccagtg
tgttataccccagcctggatacaagatgtgaagataaacagacaattggacagcatgatc
cagctgtgtagtaagcttcagaatttgctgcacgacactgatcttgcagatttgaaagaa
gaaacatctaggaagagtttatttaatgatgcagaaagtaagaagaattcaataaaaatg
tggtttagtcctcgaagtaagaaagtcagatatactgtgagtaaactttcagtgcaaacc
cagccttctgtgaaaaatgatgaaaatgctcagcagacctccatgtatgaatttgtctct
acgagccctccggtggaggtttctgaggggcctaagaagccttccacaagatccagaaaa
aaacagaaaaagaaaactttagctgaagtcaaccgaaaatggaatttagaggcagaaaag
gaagatggtgaccttgactccaaagaggaaagtaaggaaaagctggtatccttctgtagc
caaccatctgtgattggtgacctgcagataaatggtgaaatagacttgctagcaagtggg
tccgtaacagaatctgaatgcttggatgaagtctttttaccattggctgagcatatagag
tctccagaaattgagagcaagaatgaagtagtgactcctgagaagacagtctctgcaaac
tgtcttccgtccaagaaatctttgtcatcaggtcataatgggaagcgtgggcgtcacaac
agaatttccagtcctgtttctaagagatgcagaagcagaagtcagagcgctggtggaaac
tctgttaagcaaacagtcctcttagaaaacatgccattgcctggctgttcttcaccacct
tcaaacaaacttaaagttgatgacacattaagtaggactagccgtactatattggatgaa
tccattagcctttcaccaggtacgccgccttctacactgaacagtgcaagttacagacga
atgatgtgtagcccctcagcaacaaagctgtggcccattagccatacagctgtgaagaga
aatcatcgaggagagactttgctccatattgcttcaattaagggcgacatcccttctgtt
gaatacctcttacaaagtggaaacgacccaaatgttaaagaccatgctggatggacacca
ttgcatgaagcctgcaatcacgggcacctgaaggtggtggagctgctgctccagcacaag
gcgttggtgaacaccactgggtatcagaacgactcgcctcttcacgacgcagtgaagaac
gggcatgtggacattgtcaagctgttactcagctatggtgcctccagggaggcagtcaac
atatttggtctgcggcctgtggattatgcagacagtgaaaatatgaaatcagtgttgctg
ctaccggagaagaaggaatcctcatcaaccagccattgctctgtagtaaacactggtcag
cgtcgggatgggcctcttgtacttataggcagtggactttcttccgaacaacagaaaatg
ctcagtgagcttgcaacgattcttaaagctaaaaaatgtgccgagtttgacagtacagta
actcatgtcattgttcctggtgatacagttcaaagcaccctgaaatgtatgcttggaatt
ctcagtggatgctggatcctaaaatttgaatgggtgaaagcatgtctacaaagcaaagaa
tgtgaacaggaagaaaagtatgaaattcctgaaggaccacagaaaagcaggctcaacaga
gaacagctgttgccaaagctgtttgatggatgttacttctatttggggggaaccttcaaa
caccatccaaaggacaaccttattaagcttgtcgctgccggtgggggccagatcctcatt
agaaagcccaagccagacagtgacgtgactcaaaccatcaatacagtcgcgtaccatgcc
aaacctgattctgatcagcgcttctgcacacagtatatcatctatgaggacttgtctaat
catcgcccagaaagggttcggcagggcaaagtctggatggctccttccagctggtttata
gattgtgtgatgtcctttgagttgctccctcttgacaactga
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integrated database retrieval system
