Bubalus bubalis (water buffalo): 102400410
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Entry
102400410 CDS
T05912
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X8
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102400410 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102400410 (CNOT1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102400410 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102400410 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
102400410
NCBI-ProteinID:
XP_025124553
EnsemblRapid:
ENSBBUG00015013068
LinkDB
All DBs
Position
18:complement(25928447..26013876)
Genome browser
AA seq
2326 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSTDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELLSFIQHSLINPE
IFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPI
KHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQL
IMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKL
DKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQA
CAGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGM
ASLSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLP
VGGLGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEAN
QHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFE
EYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAA
LDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIAL
AQAQAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDT
LLVATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMK
RVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGH
WLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNP
WTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLS
APKKDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLN
PTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRM
RIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQ
DNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQI
RLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCIT
ELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGAD
ADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLV
NMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAH
SRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEIS
YRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIV
VGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTK
APGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQI
LYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNL
KVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRY
NLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAI
ANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELI
KNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6981 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagtagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtca
ctgattacgaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagcacagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaggaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctgtcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacagaatcctg
cctgattccggaggggtagctaaaaccatgatggagagctctttggctgattttatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttaggaatgatggctcgaact
cattcaggattaacagacggaattccattacagagtatctctgctcctggcagtggaatc
tggagtgatgggaaagataaaagtgatggagcacaggcacacacatggaatgtagaagtc
ttgatcgatgttctcaaagaactgctctccttcattcagcattcccttataaatccagag
atcttctgttttgccgactatccctgtcatactgttgccactgatattctgaaagcacca
ccagaggatgacaatcgagaaattgccacatggaagagcttggatttgattgaatctctg
ctaaggctcgcagaggtagggcaatatgagcaagtcaaacagctcttcagcttccctatc
aaacactgtccagacatgctggtattggccttattacaaatcaacacctcctggcacacc
ttgcgccacgaactcatctccactctgatgccaattttccttggaaaccaccctaactca
gctataattttgcactatgcatggcatggacagggacagtctccctcaatccgccaactt
atcatgcatgcaatggcagaatggtacatgcgaggggagcagtatgaccaggccaaattg
tctcgaatacttgatgtggcccaggacttgaaggctttgtcaatgctgctaaatggtact
ccatttgcctttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaactt
gacaagtggctcacagataaaattcgagagcatggagagccttttatccaggcttgtatg
acttttttaaagagacggtgtccttctattttggggggacttgccccagagaaagatcag
cccaaaagtgctcaacttcctccagaaaccctagcgacaatgttggcctgtttacaagct
tgtgcagggagtgtttctcaggagttatcagaaaccatcctcaccatggtggccaattgc
agtaacgttatgaacaaggccaggcagccaccaccgggagttatgccaaaaggacgccct
cctagtgctagcagcttggatgccatttctcccgttcagattgaccctcttgctggaatg
gcatctcttagtataggtggttcagctgcccctcacacccagagtatgcagggctttcct
ccaaatttgggttctgcattcagtaccccacagtcaccagcaaaagcatttccacccctt
tcaaccccaaatcagacaactgcattcagtggtattggaggactttcatcacagcttcca
gtaggtggtcttggcacaggcagcctgactggtataggaactggggctcttggactccct
gcagtgaatagcgatccttttgtacagaggaaactgggcacctctggactgaaccagcct
acattccagcagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaat
cagcactttagtaaagagatagatgatgaagcaaacagctatttccagagaatatataat
cacccaccacatccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaa
gattctaccataaagagggaacgagaagtatttaactgtatgctaaggaacttgttcgaa
gaatatcggttctttccccaataccctgataaagagttacatataacagcctgcctgttt
ggtggaataattgaaaaaggactggtcacttacatggcactaggtttggccctgcgatac
gttcttgaagccttacgcaagccttttggatccaaaatgtattattttgggattgctgca
ctagatagatttaaaaatagattgaaggactatccccagtattgtcagcacttggcttcg
atcagtcactttatgcaatttccacatcatttacaggagtatattgagtatggacagcaa
tctagagatcctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactg
gctcaagcccaggcccaggcccaggttccagcaaaagctccccttgctggccaggttagc
actatggtaaccacctcaacaactaccactgttgctaaaacggttacagtcaccaggcca
actggagtcagctttaagaaagatgtgccaccttctattaatacaacaaatatagataca
ttgcttgtggccacagatcaaactgagagaatcgtagagcccccagaaaatatccaggag
aaaattgcttttatcttcaacaacctttcccagtcaaatatgacacaaaaggttgaagaa
ctaaaggaaactgtgaaggaagaatttatgccttgggtttcacagtacctggttatgaag
agagtcagtattgagccaaactttcacagcctgtattctaacttccttgacacgctgaag
aatcctgagtttaataagatggttctgaatgagacctatagaaacatcaaagtactcctg
acctctgataaagctgcagccaatttctctgatcggtctttgctgaagaacttgggacat
tggctaggaatgattacactagctaaaaataaacccatcttacacactgacttggatgta
aaatctttgctgctagaggcttatgttaaaggacagcaagagttgctctatgtagtgccc
tttgttgccaaagtcttagaatctagcattcgtagtgtggtttttaggccacccaacccc
tggacaatggctattatgaatgtattagctgagctacatcaagaacatgacttaaagtta
aacttgaagtttgaaattgaggtcctctgtaagaatcttgcattagacatcaatgagcta
aaacctggaaacctcctaaaggataaagatcgcctgaagaacttagatgagcaactctct
gctccaaagaaagatgtcaagcagccagaggagctccctcctatcacaaccacaacaact
tctacaacaccagctaccagcaccacctgtacagccaccgttccaccacagccacagtac
agttaccatgacatcaatgtctattccctcgcaggcctggcaccacacattactctaaac
ccaacaattcccttgtttcaggcccatccacagctgaagcagtgtgtgcgccaagcaatt
gaacgggccgtccaggagctggtccatcctgtggtggatcgatcaattaagattgccatg
actacttgtgagcaaatagtcaggaaagattttgccctggattctgaggaatctcgaatg
cgaatagcagctcatcacatgatgcggaacttgacagctggaatggccatgattacttgc
agggaacctttactcatgagcatatcaaccaacctgaaaaacagttttgcctcagccctt
cgtactgcaagcccacaacaaagggaaatgatggatcaggcagctgctcaattagctcag
gacaattgtgaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccct
gagatggacaagagattagcaactgaatttgagctgagaaaacatgctaggcaagaaggg
cgaaggtattgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatc
aggctgaaagttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgc
aatgtgcctggcttcttgcctacaaatgatttaagtcagcccacaggatttttagcccag
cccatgaagcaagcttgggcaacagatgatgtagctcagatttatgataagtgtattaca
gaactggagcagcatcttcacgctatcccgccaactttggccatgaacccccaagctcag
gcccttagaagtcttctggaggttgtagtattatcacggaactctcgagatgccattgct
gctcttggattactccagaaggctgtagagggtttactggatgccaccagtggtgctgat
gctgacctcctccttcgctacagagagtgccacctcttggtcttgaaagctcttcaagat
ggccgggcatatgggtctccatggtgtaacaaacagatcacaaggtgcctaattgaatgt
cgggatgaatacaaatataatgtggaggcagtggagttgctaattcgcaatcatttggtc
aatatgcaacagtatgatcttcaccttgctcagtcaatggagaatggtttaaactacatg
gctgtggcatttgctatgcaattggtaaaaatactgctggtggatgaaagaagtgttgcc
catgttactgaggcagatctgttccacaccattgaaaccctcatgaggattaatgctcac
tccagaggcaatgctcctgaaggattgccccaactgatggaagtagtgcgatccaactat
gaagcaatgattgatcgtgctcatggaggccctaactttatgatgcattctgggatctct
caagcctcagagtatgatgatcctccaggcctgagggagaaggcagagtatcttctgagg
gaatgggtgaatctctaccattcagcagcagctggtcgtgacagtaccaaagctttctct
gcgtttgttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaag
actgatgacctcataacaaggttctttcgtctgtgtactgagatgtgtgttgaaatcagt
taccgtgctcaggcagagcagcagcacaatcctgctgctaatcccaccatgatccgagcc
aagtgctatcacaacctggatgcctttgtccgactcattgcactgctagtaaagcactca
ggggaggccaccaacactgtcacaaagattaatctgctgaataaggtcctcggtatagta
gtgggagttctcctacaggatcatgatgttcggcaaagtgaatttcagcaacttccctac
caccgaatttttatcatgctgctcttggaactcaatgcacctgagcatgtgttggaaacc
attaatttccagacacttacagctttctgcaacacattccacattttgaggcctaccaaa
gctcctggctttgtgtatgcttggcttgaactgatctcccatcggatatttattgcaaga
atgctggcacacacaccacagcagaagggatggcctatgtatgcacagttactgattgat
ttattcaaatatttagcgcctttccttagaaatgtggaactcaccaaacctatgcaaatc
ctctacaagggcactttaagggtgctgctggttcttttgcatgattttcccgagttcctt
tgtgattatcattatggattttgtgacgtgatcccacctaattgtatccagctaagaaat
ctgatcctgagtgccttcccaagaaacatgaggctcccagacccattcactcctaatctg
aaggtggatatgttgagtgaaattaacatcgctccccggattctcaccaattttactgga
gtgatgccacctcaattcaaaaaggatttggattcctatcttaaaactcgatcacccgtc
actttcctatctgatctgcgcagcaacctacaggtatccaatgagcctggtaatcgctac
aacctccagctcattaatgcactggtgctctatgtagggactcaggccattgcacacatc
cacaacaagggcagcacaccttcaatgagcaccatcacgcattcagctcacatggacatc
ttccagaacctggctgtggatttggacactgaaggtcggtatctcttcttgaatgcaatt
gcaaatcagctgcggtacccaaatagccacactcactacttcagctgcaccatgctgtac
ctttttgcagaggccaacactgaagctattcaagaacagatcacaagggttcttttggaa
cggttgattgtaaataggccacatccttggggtcttcttattaccttcattgagctgatt
aaaaatccagcatttaaattctggaaccatgaatttgtacactgtgccccagaaattgaa
aagttattccagtccgtcgcacagtgctgcatgggacaaaagcaggctcagcaagtaatg
gaagggacaggtgccagttag
DBGET
integrated database retrieval system
