Bubalus bubalis (water buffalo): 102402673
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Entry
102402673 CDS
T05912
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X3
KO
K12821
pre-mRNA-processing factor 40
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102402673 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102402673 (PRPF40B)
Spliceosome [BR:
bbub03041
]
Complex A
U1 snRNP components
U1 related factors
102402673 (PRPF40B)
Complex B
102402673 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
102402673
NCBI-ProteinID:
XP_044797660
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All DBs
Position
4:90064522..90084926
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AA seq
914 aa
AA seq
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MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
MPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRVYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDDLEALVKQEAAGKQQQPQTLQPQPPQPQPDPPPVPPGPTLLPTGLLEPEP
GGSEDCAVSEAAQPLEQGLLQQPEEGPSSSAGQHQPPQQEEEESKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKE
DALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWME
LYPAVSTDIRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRLRRREAAFRSMLR
QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHSKGRKHG
RKGKKHHRKRSHSPSVSWRGSESGDEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESG
GAALGGRGSPSSRLLLGSGGKRREGRRTGLRLPQKDHGLRKAKKPKKKTKKRRHKSNSPE
SETDPEEKAAKESDEKEPEQDKDRDLRRAELPNRSPAFGIKKEKTGWDTSESELSEGELE
RRRRTLLQQLDDHQ
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgcctcctccaggaatccccccaccttttcctcca
atggggctccctcccatgagtcagagaccaccagccatcccccccatgccacctggcatc
atgcccccaatgctcccaccaatgggggcaccaccaccactcacacagataccaggaatg
gtacctcccatgatgccaggaatgctgatgccagcagtgcctgtcaccgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctgggacaggccctccgagggccctgtgg
agcgagcatgtggcccctgacgggcgcgtctactactacaacgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcagagctcctgctgtcccagtgtccc
tggaaagagtacaagtcggacacaggcaaaccttactactacaacaatcagagtaaggag
tcccgctggacccggcccaaggacctggatgacctggaggctctagtcaaacaagaggct
gcagggaaacagcagcagccacagacactacagccacagcctcctcagcctcagcccgat
cccccacctgtgccgcccggccccacccttctgcccacaggcctcctagaacctgagcca
ggtgggagtgaagattgcgccgtgtcagaggctgcccagcccctggaacaggggctcctg
cagcagccagaggagggccccagcagttctgctggacagcatcagccaccacagcaagag
gaagaagaatcaaaaccggagccggagaggtctggcctcagttggagcaaccgggagaag
gcaaagcaggccttcaaggagctgctgagggacaaggctgtcccctccaatgcttcgtgg
gaacaggccatgaagatggtggtcactgacccccgttacagtgccttgcccaaactgagt
gagaaaaagcaggcattcaatgcctacaaagcgcagcgggagaaggaggagaaggaagag
gcccggctaagagccaaggaggccaagcagaccttgcagcatttcctggagcagcatgaa
cgcatgacctccactacccgctaccggcgggcagaacagacctttggggagctggaggtc
tgggctgtggtccctgagagggatcgaaaagaggtttatgatgatgtcctcttcttcctg
gccaagaaggagaaggaacaggccaagcagctgcggcgccgcaacatccaggccctgaag
agcatcctagatgggatgagtagtgtcaacttccaaaccacatggtcccaggcccagcag
tacctcatggataaccccagctttgctcaggaccatcagctgcagaacatggacaaggaa
gatgcgctgatctgctttgaggagcacatccgagctttggagagggaggaggaggaggag
cgagagcgagcccgacttcgggagcggcgccagcagcgcaagaaccgggaggccttccag
accttcctggatgagctgcacgagacagggcagctgcactccatgtccacctggatggag
ctgtacccagcggtcagcactgatatccgctttgccaacatgctgggccagccgggctcc
acccctctggacttgttcaagttctatgtggaggagttgaaggcacgattccatgatgag
aagaagatcataaaggacatccttaaggaccggggcttctgcgtggaggtgaacacagcc
ttcgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggatgcaggc
aacatcaagctgactttcaatagtctgctggagaaagcagaggcgcgcgagagagagcgg
gagaaggaggaggcccggcggctgcggcgcagggaagctgccttccgaagcatgctgagg
caggctgtgcctgctctggagctgggcacggcctgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctctttcgggag
ttcctgcaggtactggagacggaatgccagcacctccacagcaaaggccggaaacacggc
agaaagggcaagaagcaccatcgcaagcgttcccactcgccttcagtgagttggcggggc
tctgagtcaggagatgaggagctgcccccaccctctctccggccccccaagcggaggcga
cggaacccctcggagtcaggctctgagccctcttcctcacttgattctgttgaaagtggg
ggtgctgcccttggaggacggggttccccctcctctcgccttctccttggatcaggcggg
aagcggagagaaggaaggaggactggactgagacttcctcagaaagatcatggtcttcgg
aaagccaagaaaccaaaaaagaaaactaagaagagaagacacaagtcgaatagtcctgag
agcgagacagaccctgaggagaaagctgccaaggagagtgatgagaaagaaccagaacag
gacaaggacagggacctccggcgggcagagctccctaaccgctccccagcctttggaatc
aagaaggagaagacgggctgggacacgtcggaaagcgagctgagtgagggtgagctggaa
agacggcggcggacgctcttgcagcagctggacgaccaccagtga
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