Bubalus bubalis (water buffalo): 102403122
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Entry
102403122 CDS
T05912
Symbol
VPS50
Name
(RefSeq) syndetin isoform X2
KO
K23288
syndetin
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bbub04131
]
102403122 (VPS50)
Membrane trafficking [BR:
bbub04131
]
Protein recycling
Others
EARP complex
102403122 (VPS50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
SAC9_GBDL_2nd
Motif
Other DBs
NCBI-GeneID:
102403122
NCBI-ProteinID:
XP_006078381
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Position
8:10266838..10397898
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AA seq
963 aa
AA seq
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MQKIKSLMTRQGLKSPPESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
YFSTDSFDIVKYELEKLPPVLNLQDLEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAAICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIELLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTTSTSEG
SNMGAEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISR
LMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSIL
QLHEFKFMEQSRSPSVSPSKQSSATSSKTVTLFEQYCSGGNPFEIQADHKDEETEDVLAS
NGYESDEQEKSAYQEYDSDSDVPEELKRDFVDEQTGDAPVKSVSRETLKSRKKSDYSLNK
VNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLE
STGLGLSSSRLRTTLNRIQESLIDLEVSADGAAPLTAAEERKEKVPSPHLSHLVVLASGD
TLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIY
WIVAGKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDTLLKEFEQFNMRLNEVSKRVRIPL
PVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKE
FVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLSAIDDIDR
PKR
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaatcaaatctcttatgacccggcagggtctgaaaagtcctccagagagcctc
agtgatcttggtgccattgagagtctccgggtacctggaaaggaggaattccgagaactt
cgagaacagcctagtgaccctcaagctgaacaagaactaattaatagtattgaacaagtg
tatttttctacagattcatttgatattgttaaatatgaactggagaagctccctcctgtt
ctcaatttgcaagacttagaggagtacagagacaaattgaaacaacagcaagctgcagtc
tcaaaaaaagtagcagatttaatccttgaaaaacagcctgcttatgtcaaggaacttgaa
agagttacctcattacaaacagggcttcagttagctgctgctatctgcaccaatgggagg
agacacttgaatattgcaaaggaaggttttactcaagctagtttaggcctccttgcaaat
cagaggaaacgtcagttgctgattgaacttctgaaatctctgagaacgataaaaacattg
caaagaacagatgtccgcttaagtgaaatgctggaggaggaagactatccaggagctatt
cagctgtgcctggaatgtcagaaagctgccagcacttttaaacattacagttgcataagt
gaactgaattcaaagttgcaagatactttagaacaaattgaggaacagttggatgttgct
ctgtccaaaatatgcaagaattttgacattaaccactacaccaaagttcaacaagcttat
cgacttcttggaaaaacacagacagcaatggaccaacttcatatgcacttcacccaagcc
attcataacactgtgtttcaagttgttcttggctatgtggaactatgtgcaggaaacaca
gatacaaaattccaaaagctgcaatataaggatctctgtacgcatgttacaccagacagc
tatattccatgccttgctgacctgtgcaaagccctgtgggaagttatgctcagctattac
aggactatggaatggcatgaaaagcatgataatgaggatactacttctacttctgaaggg
agtaatatgggtgctgaagagacaaattttgatcgtggctacataaaaaagaaattagaa
catggacttacacgaatatggcaggatgttcagctaaaagttaaaacctacttgcttgga
actgatttgtctatattcaaatatgatgatttcatctttgttttggatataatcagcagg
ttgatgcaagttggagaagaattttgtggtagcaagtctgaagttttgcaagaatctatt
agaaaacaaagtgtcaattattttaagaactaccatagaacgaggcttgatgaactgaga
atgtttctagagaatgagacctgggagctttgtcctgtgaagtcaaatttcagcatcttg
caacttcatgaatttaaattcatggaacagtctcgttccccatcggtttcacccagtaag
cagtcatctgcaacttcctcaaaaacagtaaccttgtttgagcagtactgcagtggtgga
aatccatttgaaattcaggcggaccacaaagatgaagaaacagaagatgtcctggcttct
aatgggtacgaatctgatgaacaggaaaaaagtgcctatcaggaatatgacagtgacagt
gatgttcctgaggaactaaaacgagattttgttgatgagcagacaggcgatgctcctgtg
aaaagtgtttctcgagagaccctaaaaagcaggaagaaatcagattacagtctaaataaa
gtgaatgcacccatcttaacaaatacaacattgaatgtaataaggcttgttggtaaatat
atgcagatgatgaacattcttaagccaattgcttttgatgttatccatttcatgtctcag
ctctttgattattacttgtatgcaatatataccttttttggtcggaatgattcattggaa
tcaacaggactaggtcttagtagtagtagactaagaacaactctaaacaggatacaagaa
agcctcattgatctggaggtttcggctgatggcgccgccccgctcacagcagcagaagag
aggaaggagaaggtgccgagtcctcacctgagccacctagtggttttggcctccggggac
acactgtatgggttggcggaaagagtggtcgccacagaatccttggtattcttggctgaa
cagtttgagttccttcagcctcatctggatgctgtgatgcctgcagtcaaaaaacccttt
cttcagcagttttattctcagacggtctcaacggccagtgaactacgcaaaccaatttac
tggatcgtagctggtaaagccattgattatgaacagatgctgctgctgatggctaatgtg
aaatgggatgtaaaagaaattatgtcacagcacaacatatatgtagatacgctgttaaag
gaatttgagcagtttaacatgcggttaaatgaagtttctaagagagttcggatacccttg
cccgtgtctaatatactttgggaacattgtatacgcctggctaatagaactattgtggaa
ggatacgccaacgtcaagaagtgtagtaatgagggtcgtgccttgatgcaattggatttt
caacagtttttaatgaaacttgaaaagctaactgatatcagacccattccggataaagaa
tttgtggaaacctacattaaagcatactacctaactgagaatgacatggaacgctggatc
aaagagcacagggagtattcaacaaagcagctgaccaacctggtaaatgtttgcctggga
tcccatatcaataagaaagcaagacaaaaacttctctcggctatagatgatatagacaga
cccaaaagataa
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