Bubalus bubalis (water buffalo): 102403491
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Entry
102403491 CDS
T05912
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X3
KO
K10754
replication factor C subunit 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03030
DNA replication
bbub03410
Base excision repair
bbub03420
Nucleotide excision repair
bbub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102403491 (RFC1)
03410 Base excision repair
102403491 (RFC1)
03420 Nucleotide excision repair
102403491 (RFC1)
03430 Mismatch repair
102403491 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbub03032
]
102403491 (RFC1)
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102403491 (RFC1)
DNA replication proteins [BR:
bbub03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102403491 (RFC1)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102403491 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
RuvB_N
AAA_14
AAA_5
Rad17
AAA_33
AAA_7
AAA_30
AAA_18
nSTAND3
AAA_16
AAA_17
Zeta_toxin
RNA_helicase
AAA_19
NTPase_1
NPHP3_N
Nexin_C
Motif
Other DBs
NCBI-GeneID:
102403491
NCBI-ProteinID:
XP_044801908
LinkDB
All DBs
Position
7:58831527..58913624
Genome browser
AA seq
1125 aa
AA seq
DB search
MDIRKFFGVIPSGKKLVSETVKKNEKTKSAEESLKAKKGIKEIKVNSSCKEDEFKPKQSN
KKKRIIYDSDSESEETVQVKNAKKRPEKLPLSSKLAKIQQQDPVTYISETDEDDDFVCKK
TASKLKENGGSTNSYLGASNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSIQRSDKK
MVASRRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
AEKDAEERETFSSVQVNLCKAEKPKYPHKEQFSDERKNFSPKKQTKCEGSRQSQQRSRSS
AHKTGETSPKASSKLALLKKKEESSNKETEFMASKRKENVIELKETRTPKKIKSSPAKKE
SVSPDEAEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMPGK
KSKYEIAAEAEMKKEKSKLERTPQKKDQGKRKSSPTKKESESKKCKLTPKRESSIKSLKK
EASVSQRGLDFKEQAAEETNGDSRARNLADDSRESKVESLLWVDKYKPTSLKTIIGQQGD
QSCANKLLRWLQNWHKSPSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLV
CQELGYSYVELNASDTRSKNSLKEIVAESLNNTSIKGFYSSGTVHSVGTRHALIMDEVDG
MAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAM
MSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLNMWCARNKALTYDQAKADSHRAKKDI
KLGPFDVARKVFVTGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKH
LMLLSRAADSICDGDLVDRQIRNKQSWSLLPTQAIYASVLPGELMRGYMTQFPTFPSWLG
KYSSMGKHDRTVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVQPLASQGIEGVQDVVAL
MDAYYLMKDDFESIMEISSWGGRPSPFSKLDPKVKAAFTRAYNKEVHLTPYSLQAVKTHR
HSTGPSLDSEYNEELNEDDSQSDEKDQDTLETDAMIKPCLKLLLQ
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaaacaaagtctgctgaagaaagtttaaaagcaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaagaagatgaattcaagccgaagcagtcaaac
aagaaaaagaggatcatctatgattcggattcagaatcagaggaaacagtacaggtaaaa
aatgccaaaaagcgaccagaaaaattgccactgtcttctaaacttgctaaaatccaacag
caggatcctgttacgtacatttcagaaacagatgaagacgatgactttgtgtgtaagaag
acagcctctaaattaaaagaaaatggaggatctacaaatagttatcttggagcatcaaac
atgaaaaagaatgaggaaaacactaagaccaagaataagcctttgtcaccaataaaactt
acccccacatcagtgcttgattattttggaactggaagcatccaaagatcagataagaag
atggtggcaagcagaagaaaagagccttcacaaaatgcagatgattccagattaaatgat
gaagccatcgccaagcaattacagcttgatgaagatgcagagctggagagacaactgcat
gaagatgaagagtttgccagaacgttagccatgttggatgaagaacccaagaccaaaaag
gctgaaaaggatgcagaagaaagagagacattttcatctgtacaagtcaatttatgtaaa
gcagagaaacctaaatatcctcataaagaacaattttcagatgaaagaaagaacttcagc
cctaagaagcaaactaagtgtgaaggttcaagacaatcccagcaacgttccaggtcatca
gctcataaaacaggagaaacttctccaaaagccagttctaagctggcacttttgaaaaaa
aaagaagagagttctaataaagaaacagagtttatggcctcaaaaagaaaagaaaatgtt
attgagttaaaagagacaagaactcctaagaaaatcaaaagttctccagctaaaaaagag
tctgtaagtcctgatgaggctgaaaagagacgcactaattatcaagcttaccgaagctac
ttaaatcgagaaggtcccaaagctctgggctccaaagaaataccaaagggagctgaaaat
tgcttggaaggccttacgtttgtaatcacaggagtgctggagtccattgaacgagatgag
gccaagtctctaattgagcgttatgggggaaaagtgacaggaaatgtcagcaagaaaaca
aactacctggtcatgggtcgtgatagtggccaatccaagagtgacaaggcagcagccttg
ggaacaaatattattgatgaagatggcctgttgaatctgattcgaactatgccaggcaag
aagtccaagtatgaaatagccgctgaagctgagatgaagaaagaaaaatccaaattggaa
agaacaccccaaaaaaaagatcaaggaaaaagaaaaagtagtccaactaagaaggaatca
gaatctaaaaagtgcaaactgactcccaaaagggaaagctctataaagtcactaaaaaag
gaagcaagtgtgtctcagagaggcctggacttcaaggagcaggcggctgaggagacaaat
ggtgacagccgggctaggaatttggctgatgacagcagagaaagcaaagtggaaagtttg
ctctgggtggataagtataagccaacctcgctcaagaccataattggacagcaaggtgac
cagagctgtgccaacaaactcctgcgctggctccaaaactggcacaagagtccatccgaa
gataagaaacacgcagcaaagtttgggaaatttgctggcaaagatgatggctccagtttt
aaagcggcgctgctctcaggtcctcctggtgttggcaaaacaaccacagcttctctggtt
tgtcaggaattgggatatagctatgtggaactgaatgcaagtgacactcggagtaagaac
agtttgaaggagattgttgctgagtcactgaataataccagcatcaaaggcttttattca
agtggaacagtccattcagtaggcacgaggcatgctctcatcatggatgaagtagatggc
atggctggcaatgaggacaggggaggaattcaggaattaattggcctgataaaacataca
aaaattcccattatttgtatgtgcaatgatagaaatcatcccaagattcgctctttggtt
cattattgttttgatcttcgttttcaaagacctcgggttgaacagattaagggtgctatg
atgtctattgcatttaaagagggtctaaagatcccccctccagctatgaatgaaataatt
ttgggagctaatcaagatatcagacaggttttacacaacctgaatatgtggtgtgcacgg
aataaggcactaacttatgaccaggccaaggctgattctcatagagccaaaaaggacatc
aaactgggcccatttgatgttgcccggaaagtgtttgtaactggagaggagactgctcat
atgtcacttatggacaaatcagatctcttcttccatgattattcaatagcacccctcttt
gtccaggagaattacatacatgtgaagcccgtggctgcagggggtgacatgaaaaagcac
ttgatgcttttaagcagagcagcagacagcatatgtgatggtgacctagtggaccgtcaa
atccggaataagcaaagctggagtcttctgcccacacaggccatttatgccagtgttctt
cctggagagttaatgagggggtacatgacccagtttcctaccttcccgagttggttgggg
aagtactcatctatgggcaaacacgatcgtaccgttcaggacctggctttgcatatgagt
ctcagaacttactccagcaaaaggacagtaaacatggattatctgtcacatataagagat
gcacttgtacagcccttggcctcacaagggatagaaggagtacaggatgttgttgcgctt
atggatgcatattatttgatgaaagatgacttcgagagtattatggaaattagcagctgg
ggaggcagacctagtccgttctctaaactggatcccaaggtgaaagcagccttcacaaga
gcttacaataaagaagtccaccttactccatattcactccaggccgtaaagacacacaga
catagcacaggcccatctctggattctgaatacaatgaagagttaaatgaagatgactct
cagtctgatgagaaagaccaggacactttggaaactgatgctatgatcaagccctgcttg
aaacttctgcttcagtga
DBGET
integrated database retrieval system
