Bubalus bubalis (water buffalo): 102403678
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Entry
102403678 CDS
T05912
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X2
KO
K19719
collagen type II alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04974
Protein digestion and absorption
bbub05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102403678 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102403678 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102403678 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102403678 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102403678 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102403678 (COL2A1)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102403678 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
102403678
NCBI-ProteinID:
XP_006059501
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Position
4:complement(87979711..88010135)
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AA seq
1418 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG
KPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG
ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG
APGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG
KRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG
RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG
PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGARGLPGTPGTDG
PKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG
PIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG
EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG
SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGPDG
PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG
PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPVGKQGDRG
EAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSG
DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG
PPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLKSLNNQIESL
RSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPA
SVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNI
TYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTM
IEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccggcaaccaggaccaaagggacagaaaggagaacct
ggagatatcaaggacatcgtaggacccaagggacctcctggacctcagggacccgcaggt
gaacaaggacccagaggtgatcgtggtgacaaaggtgaaaaaggtgctcctggacctcgt
ggcagagatggagagcctgggacccctggaaaccctggcccccctggtcctcccggcccc
cccggcccccctggccttggtggaaactttgctgcccagatggctggtggatttgatgag
aaggctggtggcgcccagatgggagtaatgcagggaccaatgggccccatgggacctcgg
ggacccccaggccctgctggtgctcccggacctcaaggatttcaaggcaaccctggtgaa
cctggggaacccggtgtttctggtcccatggggccccgtggtcctcctggcccccctggg
aaacctggtgatgatggtgaagctggaaagcctggaaaatctggcgagagaggccctcct
ggccctcagggtgctcgtggtttcccaggaaccccaggccttcctggtgtcaaaggtcac
agaggttacccaggtctagatggtgctaagggagaagctggtgctccaggtgtgaagggt
gagagtggttccccaggtgagaacggttctccaggcccaatgggtccccgcggcttgcct
ggtgagagaggacggactggccctgccggcgctgcaggcgctcgaggcaatgacggtcaa
ccaggccctgcagggcctccgggtcctgtgggtcctgctggcggtcctggctttcctggt
gctcctggtgccaagggtgaagctggccccaccggtgctcgaggtcccgaaggcgcccag
ggtcctcgcggtgaaccgggtactcctgggtcccctgggccagctggtgctgctggcaac
cctggaactgatggaatccctggagccaagggatctgctggtgcccctggcattgctggt
gctcccggcttccctggaccccgtggtccacccggccctcaaggtgcaactggtcctctg
ggcccgaaaggtcaaacgggtgagcctggtattgctggcttcaaaggcgaacaaggcccc
aagggagaaccgggccctgctggtccccaaggagcccctggtcctgctggtgaagaaggg
aaaagaggtgcccgtggagaacctggtggtgctgggcccgccggtccccctggagaaaga
ggtgctcctggaaaccgtggtttcccaggtcaggatggtctggcaggtcccaagggagcc
cctggagagcgaggacccagtggccttgctggtcccaagggagccaacggtgaccctggc
cgtcctggagagcctggccttcctggagcccggggtctcactggtcgccctggtgatgct
ggtcctcaaggcaaagttggtccttccggagcccctggtgaagacggtcgccctggaccc
ccaggtcctcagggggctcgtgggcagcctggtgtcatgggtttccctggccccaaaggt
gccaatggtgagcctggcaaagctggtgagaaaggactgcctggtgctcctggtctgaga
ggtcttcctggcaaagatggtgagacaggtgctgcaggcccccctggacccgctggacca
gctggtgaacgaggcgagcagggtgctcctgggccatctgggttccagggacttcctggc
cctcccggccccccaggagaaggtggaaaaccaggtgaccagggtgttcctggtgaagct
ggagctcctggcctcgtgggtcccaggggtgaacgaggtttcccaggagaacgtggctcc
cctggctcccagggcctccagggggcccgcggcctccccggcactcctggcactgatggt
cccaaaggcgcagctggcccagctggcccccctggggctcagggccctccaggtctgcag
ggcatgcccggtgagaggggagcagctggtatcgccggacccaagggagacaggggtgat
gttggtgagaaaggccccgagggcgcccccgggaaggacggtggacgaggtctgactggc
cccattggcccccctggcccagccggtgccaacggtgagaagggagaagttggaccccct
ggtcctgctggaactgctggtgctcgaggtgccccgggtgaacgtggagagacaggcccc
cctggacccgctggattcgccggtccccctggtgctgatggccagcctggtgccaaaggt
gaacaaggagaagccggccagaaaggtgacgctggtgcccccggtcctcagggcccctct
ggagctcctgggcctcagggtcctactggtgtgactggtcctaaaggagcccgaggtgct
caaggccccccgggagccaccggattccccggagcagctggccgcgtcggacccccaggc
tccaatggcaaccctggaccccccggtcctcctggtccttctggaaaagatggtcctaaa
ggtgctcgaggagacagtggcccccctggccgagctggtgaccctggcctccaaggtcct
gctggaccccctggcgagaagggagagcctggagatgatggtccttctggtcccgacggt
cccccaggtcctcagggtctggctggtcagaggggcatcgttggtctgcctggacagcgt
ggtgagcgaggattccccggcctccccggcccctcgggtgagcctggcaagcagggagcc
cctggagcatctggagaccgaggtccccctggccctgtgggtcctcctggcctgactggt
cctgctggcgagcctggacgtgagggaagccccggtgctgacggcccccctggcagagat
ggcgcggctggagtcaagggtgaccgtggagagactggtgccgtgggtgcccctggagcc
cccgggccccctggctctcctggccccgccggcccagttggcaagcagggagaccgagga
gaagctggcgcacaaggtcccatgggacctgcaggacctgctggagcccggggaatgcca
ggccctcaaggcccccgaggtgacaaaggagaaactggagaggctggcgagaggggactg
aagggacaccgtggcttcactggtctgcagggtctgcccggcccccctggtccttctgga
gaccagggtgcttccggtcctgcaggtccttctggccccagaggtcctcctggccccgtc
ggtccctctggcaaagatggtgctaacggaatccctggccccattggacctcctgggccc
cgtggacgttccggcgagactggccctgctggtcctcctggaaaccctggaccccctggc
cctcctggcccccctggccctggcatcgacatgtctgcctttgctggccttggccagaga
gagaagggccctgatcctctgcagtacatgcgggccgacgaggcagccggcaacctgaga
cagcatgatgccgaggtggacgccacactcaagtccctcaacaaccagatcgagagcctc
cgcagccccgagggctcccgcaagaacccagctcgcacctgccgagacctgaaactctgc
caccctgagtggaagagcggagactactggatcgaccccaaccagggctgcaccctggat
gccatgaaggttttctgcaacatggagactggcgagacctgcgtctaccccaacccggcc
agcgtccccaagaagaactggtggagcagcaagagcaaggacaagaaacacatctggttt
ggagaaaccatcaacggtggcttccacttcagctatggagatgacaacctggctcccaac
accgccaacgtccagatgaccttcctgcgcctgctgtccaccgagggctctcagaacatc
acctaccactgcaagaacagcattgcctacctggacgaagctgctggcaacctcaagaag
gctctgctcatccagggctccaacgatgtggagatccgggctgagggcaacagcaggttc
acatacaccgttctgaaggatggctgcacgaaacacaccggtaagtggggcaagactatg
atcgagtaccggtcacagaagacctcccgtctgcccatcattgacattgcacccatggac
ataggagggcccgagcaggaattcggtgtggacatagggcctgtctgcttcttgtaa
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