Bubalus bubalis (water buffalo): 102404293
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Entry
102404293 CDS
T05912
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102404293 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102404293 (SF3B1)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102404293 (SF3B1)
Spliceosome [BR:
bbub03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102404293 (SF3B1)
Complex B
102404293 (SF3B1)
Complex C
U2 SnRNP specific factors
102404293 (SF3B1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102404293 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
102404293
NCBI-ProteinID:
XP_006078216
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All DBs
Position
2:complement(138104972..138141626)
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AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKNVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagatccgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacgggttattatgac
caggaaatttacggtggaagtgacagcaggtttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccatttgctgagcatcgacctccgaagattgcagatcgggaagatgaatacaaa
aagcacaggcggaccatgataatttcccctgagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcaacagctagcagaaaaagctaaggctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacggaaacgacgttgg
gatcaaacagctgatcagactcctggtgccactccaaaaaagctatcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgaaacaccaggtcgtgcaaag
ggaagtgaaactcctggagcaaccccaggctcaaaaatatgggatcctacccctagtcac
acacctgcgggagctgctactcctggacgaggcgatacaccaggccacgcaacaccaggc
catggaggcgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gattccattggtgaaacgccaactcctggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggaagcactcctgttctgacccctggaaagacaccaatt
ggcacgccagccatgaacatggccacccctactccaggtcatataatgagtatgactcct
gagcagcttcaggcttggcggtgggagcgagaaattgatgagagaaatcgcccgttgtct
gatgaagaattagatgctatgttcccagaaggatataaggtacttccccctccagctgga
tatgttcctattcgaactccagctcgaaagctgacagcaactccaacacctttgggtggt
atgacaggtttccacatgcaaacagaagatagaactatgaaaaacgttaatgaccaacca
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaacttttggtt
gatgtcgatgaatcaactcttagtccagaagagcaaaaagagagaaaaataatgaagttg
cttttaaaaattaagaatggaacacctcctatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctgctgatg
tcacctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatatta
tacaaacttgatgacttagttcgaccatatgtacacaagatcctagtggtcattgaacca
ttgttgattgatgaagattactacgctcgagtggaaggcagagagattatttctaatttg
gcaaaggctgctggactggctactatgatctctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacaacagctagagcttttgctgttgtagcctctgctctgggc
attccttcattattgcctttcttaaaagctgtgtgcaaaagcaagaagtcctggcaagcg
agacacactggtataaagattgtacagcagatagctattctcatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtcttgtggatgagcagcaaaaa
gttcggaccattagtgctttggccattgctgccttggctgaagcagcaaccccttatggt
attgaatctttcgattctgtgttaaagcctctatggaagggtatccgccaacacagagga
aagggtcttgcggctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaattcttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgtgctaaaggtggtaaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagatccttcctcccttttttaaacacttttggcaa
catagaatggctttggatagaagaaattaccgacagttagttgatactactgtggagttg
gcaaacaaagtaggtgcagcagaaattatatccaggattgtggatgatctaaaagatgaa
gctgaacagtacagaaaaatggttatggagacaattgagaaaattatgggcaacttggga
gcagcagatattgatcataaacttgaagaacaactgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaacggctttggtacagtggtcaatgct
ctcggcaaacgagtcaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatcagcaaaagttaggcagcaggcagctgacttgatctctcgaacagctgtt
gtcatgaagacttgtcaagaggaaaaattgatggggcatttgggtgttgttttgtatgag
tacttgggtgaagagtaccctgaagttttgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctgcctagactc
acccccatcttaaagaataggcatgaaaaagtacaggagaattgtattgatcttgttggg
cgtattgctgataggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gaacttttagagctcttaaaagcacacaaaaaagctattcgtagagccacagtcaataca
tttggttatattgcgaaggccattggccctcatgatgtattggctacacttctcaacaac
ctaaaagttcaagaaaggcagaacagagtttgtacaactgtggccatagctattgttgct
gaaacatgttcacccttcacagtactacctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtgttaaagtcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtaacaccactacttgaggatgctttaatggatagg
gaccttgtacacagacagactgctagtgcagtggtgcaacacatgtcacttggagtttat
ggatttggttgcgaagattcgctgaatcacttgttgaactatgtatggcccaatgtgttc
gagacatctccccatgtaattcaggcagttatgggggccctggagggtctgagagttgcg
attggaccatgtagaatgctacagtattgtttacagggtttgtttcacccagcccggaaa
gtcagagatgtgtattggaaaatttacaactccatctacatcggttcacaggatgctctc
atagcacattacccaagaatctacaacgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
