KEGG   Bubalus bubalis (water buffalo): 102404333
Entry
102404333         CDS       T05912                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
bbub  Bubalus bubalis (water buffalo)
Pathway
bbub03320  PPAR signaling pathway
bbub04148  Efferocytosis
bbub04151  PI3K-Akt signaling pathway
bbub04659  Th17 cell differentiation
bbub04919  Thyroid hormone signaling pathway
bbub04920  Adipocytokine signaling pathway
bbub04928  Parathyroid hormone synthesis, secretion and action
bbub04932  Non-alcoholic fatty liver disease
bbub04976  Bile secretion
bbub05160  Hepatitis C
bbub05200  Pathways in cancer
bbub05202  Transcriptional misregulation in cancer
bbub05207  Chemical carcinogenesis - receptor activation
bbub05216  Thyroid cancer
bbub05222  Small cell lung cancer
bbub05223  Non-small cell lung cancer
bbub05226  Gastric cancer
bbub05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    102404333 (RXRA)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    102404333 (RXRA)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    102404333 (RXRA)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    102404333 (RXRA)
   03320 PPAR signaling pathway
    102404333 (RXRA)
   04919 Thyroid hormone signaling pathway
    102404333 (RXRA)
   04928 Parathyroid hormone synthesis, secretion and action
    102404333 (RXRA)
  09154 Digestive system
   04976 Bile secretion
    102404333 (RXRA)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    102404333 (RXRA)
   05202 Transcriptional misregulation in cancer
    102404333 (RXRA)
   05207 Chemical carcinogenesis - receptor activation
    102404333 (RXRA)
  09162 Cancer: specific types
   05226 Gastric cancer
    102404333 (RXRA)
   05216 Thyroid cancer
    102404333 (RXRA)
   05222 Small cell lung cancer
    102404333 (RXRA)
   05223 Non-small cell lung cancer
    102404333 (RXRA)
  09172 Infectious disease: viral
   05160 Hepatitis C
    102404333 (RXRA)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    102404333 (RXRA)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    102404333 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:bbub03000]
    102404333 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:bbub03310]
    102404333 (RXRA)
Transcription factors [BR:bbub03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    102404333 (RXRA)
Nuclear receptors [BR:bbub03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   102404333 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 102404333
NCBI-ProteinID: XP_025117854
LinkDB
Position
12:104427723..104521220
AA seq 467 aa
MDTKHFLPLDFSTQVNSSSLSSPTARSSMAAPSLHPSLGPSIGSSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLSSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGESEVESTSSANEDMPVEKI
LEAELAVEPKTETYVEANVGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggacaccaaacatttcctgccgctcgacttctccacgcaggtgaactcctcctccctc
agctcccccacggcgcgcagctccatggccgccccctcgctgcacccctccctggggccc
agcatcggctcctcgctcggctctccgggacagctgcactcacccatcagcaccctcagc
tcgcccatcaacggcatgggcccgcccttctcggtcatcagttcccccatgggcccgcac
tccatgtcggtgcccaccacacccaccctgggctttggcaccggcagcccccagctcagc
tcgcccatgaaccccgtgagcagcagcgaggacatcaagcccccactgggcctcaatggt
gtcctcaaagtgccggcccacccctcagggaacatggcgtccttcaccaagcacatctgt
gccatctgcggggaccgctcctcaggcaagcactacggggtgtacagctgcgagggctgc
aagggtttcttcaagcggacggtgcgcaaggacctgacctacacctgccgggacaacaag
gactgcctgattgacaagcggcagcgcaaccgctgccagtactgccgctaccagaagtgc
ctggccatgggcatgaagcgcgaagccgtgcaggaggagcggcagcggggcaaggaccgg
ggcgagagcgaggtggagtccaccagcagcgccaacgaggacatgccagtggagaagatc
ctggaggccgagctggccgtcgagcccaagaccgagacctacgtggaggcgaacgtgggg
ctgaaccccagctcgcccaacgaccccgtcaccaacatctgccaagcagctgacaagcag
ctcttcacgctggtggagtgggccaagcggatcccgcacttctccgagctgcccctggac
gaccaggtcatcctgctgcgagcaggctggaacgagctgctcatcgcctccttctcgcac
cgctccatcgccgtgaaggatggcatcctcctggccaccgggctgcacgtacaccgcaac
agtgcccacagcgcgggcgtgggcgccattttcgacagggtgctgacggagctggtgtcc
aagatgcgggacatgcagatggacaagacggagctgggctgcctgcgcgccatcgtcctc
ttcaaccccgactccaaggggctctcaaacccagccgaggtggaggcgcttcgcgagaag
gtctatgcgtccctggaggcgtactgcaaacacaagtaccccgagcagccaggaaggttc
gccaagctgctgctgcgcctgcccgccctgcgctccattggcctcaagtgcctggagcac
ctcttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctg
gaggccccacaccagatgacttag

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