Bubalus bubalis (water buffalo): 102404554
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Entry
102404554 CDS
T05912
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102404554 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102404554 (PRPF6)
Spliceosome [BR:
bbub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102404554 (PRPF6)
Complex C
U5 SnRNP specific factors
102404554 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
TPR_CcmH_CycH
FAT
ARM_TT21_2nd
TPR_1
T7SS_EccA1_N
ARM_TT21_C
TPR_21
Motif
Other DBs
NCBI-GeneID:
102404554
NCBI-ProteinID:
XP_025119666
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All DBs
Position
14:29786680..29821474
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AA seq
941 aa
AA seq
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MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEE
QEELVEKAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIASTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQREEVRRR
CENAEPRHGELWCATSKDITNWQRKIGEILVLVAACIKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcttgggcatgcccgcccctctcggctacgtgccgggg
ctgggccgaggcgccactggttttaccactcgctcagacattggacctgctcgggatgcc
aacgatcctgtggatgaccgccatgcgcccccaggcaagaggactgtcggggaccagatg
aagaagagccaggctgccgatgacgatgatgaggatcttaatgacaccaattatgatgag
tttaacggctatgctgggagtctcttctcaagtgggccctatgaaaaagacgatgaggaa
gcagatgctatctatgcagccctggataaaaggatggatgaaagaaggaaggagagaagg
gagcaaagggagaaagaagaaattgagaaatatcgtatggagcgtcccaaaattcagcaa
cagttctcagatctcaaaaggaaactggcagaagtcacagaagaagagtggctaagcatc
cctgaggttggcgacgccagaaacaaacgccagcggaatccccgctatgagaagctgacc
ccagttcccgacagtttcttcgccaaacatttacagactggagagaaccacacttcggtg
gatccccggcaaactcaatttggaggcctaaacacaccctatccaggcggactgaacact
ccatacccgggtgggatgacacctgggttgatgacacctggcacaggtgagctggacatg
aggaagattggccaagccaggaacactctgatggacatgcggctgagccaggtgtctgac
tcagtgagtgggcagactgtggtcgaccccaaaggctatctgacggatttgaattccatg
attccgacccatggaggggacatcaatgacatcaagaaggcaagattgctcctcaagtct
gttcgggagacaaaccctcaccacccgccagcctggattgcatcagcccgcctggaagaa
gtcactggcaagctgcaagtggctcggaacctcatcatgaagggaacggagatgtgcccc
aagagtgaggatgtatggctggaggcagccaggttgcagcctggggacacagccaaggcc
gtggtagcccaagctgtccgtcacctcccacagtccgttagaatttacatcagagcagca
gagttggaaacagacatccgcgccaaaaagcgggttcttcgtaaagcccttgagcatgtt
ccaaactcagttcgcttgtggaaggcggctgtggagctggaagagccagaagacgctaga
atcatgctcagccgagctgtggagtgctgccccaccagcgtggagctctggctcgccctg
gcaaggctggagacctacgagaatgcccgcaaggtcttaaacaaggcccgggagaacatc
cctacagaccgccacatctggatcacggccgccaaactggaggaggccaacgggaacacg
cagatggtggagaagatcattgaccgcgccatcacctccctgcgcgccaatggcgtggag
attaaccgtgagcagtggatccaggatgctgaggagtgtgacaaggccgggagtgtggcc
acctgccaggcagttatgcgtgctgttatcgggattggcattgaggaggaagaccggaag
cacacgtggatggaagatgctgacagctgtgtggcccacaatgccctggagtgtgcccga
gctatctacgcctacgccctgcaggtcttccctagcaagaagagcgtgtggctgcgggcc
gcatacttcgagaagaaccacggcaccagggagtcactggaggccttgctgcagcgggcc
gtggcccactgccccaaagcagaggtgctatggctcatgggcgccaagtccaagtggctg
gctggggacgtgcctgcggcgaggagtatcctggctctggccttccaggccaaccccaac
agtgaggagatctggctggcggccgtgaagctggagtctgagaacaacgagtacgagcgg
gcacgccggctgctggccaaggcgcggagcagcgcgcccactgcccgggtcttcatgaag
tccgtgaagctggagtgggtgctggggaaccttgtggctgcccaggagctgtgcgaggag
gccctgaagcactatgaggacttccccaagctctggatgatgaaggggcagattgaggag
caggaagagctcgtggagaaagcccgggaagcctacaaccaagggttgaagaaatgtccc
cactccacccccctgtggcttttgctttcccggctggaggagaaggttgggcagctgacc
cgagctcgggccattctggagaagtctcgcctgaagaacccaaagaaccctggcctgtgg
ctggagtctgtgcggctggagtaccgtgcggggctgaagaacatcgccagcacgctcatg
gccaaggccctgcaggagtgccccaactctggggtcctgtggtctgaagccatcttcctg
gaggcgaggccccagcggaagaccaagagtgtggacgccctgaagaagtgtgagcatgac
ccccacgtgctcctggctgtggccaagctattctggagcgagcggaagatcaccaaggcc
cgggagtggttccaccgcactgtgaagatcgattcagatctgggggatgcctgggccttc
ttttacaagtttgagctgcagcacggcacagaggagcagcgggaggaggtgaggaggcgc
tgcgagaacgccgagccccggcacggggagctgtggtgcgccacgtccaaggacatcacc
aactggcaacggaagatcggggagatactggtgctggtggcggcgtgcatcaagaacacc
ttctga
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