Bubalus bubalis (water buffalo): 102404584
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Entry
102404584 CDS
T05912
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102404584 (PRPF39)
Spliceosome [BR:
bbub03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
102404584 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_16
TPR_MalT
FAT
Motif
Other DBs
NCBI-GeneID:
102404584
NCBI-ProteinID:
XP_006072830
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All DBs
Position
20:complement(15471455..15506723)
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AA seq
667 aa
AA seq
DB search
MQNSHMDEYRNSSNGSIGSSSEALVEQSADFSTEIMNVTEMEQSPDGSPNVNTTTEENEI
ASTVDLPVTETEANFPPEYEKFWKTVESNPQDFTGWVYLLQYVEQENHLMAARKAFDKFF
IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP
ETNSTVRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSH
HFQRFKDHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL
ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF
EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPM
VHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAERLLQEAI
KNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDL
KQNEDNILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQD
SLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAAYNYSAWYQYNYQTPWNYGQ
YYPPPPT
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaactctcacatggatgagtacagaaattccagtaatggcagcataggcagcagt
tcagaggcactggtagagcagtctgctgattttagtacggagattatgaatgttacagaa
atggagcagtcacccgatggatctcctaatgtgaacacaactacagaagaaaatgaaata
gcaagtactgtggaccttccagtgacagaaacagaagcaaatttccctccagaatatgaa
aagttttggaaaactgtagaaagtaatcctcaggattttacaggctgggtatatttgctt
cagtatgtagaacaggagaatcacttgatggctgccaggaaagcatttgacaaatttttc
atacactatccgtattgctatggttattggaaaaagtatgcagaccttgaaaagcgacat
gacaacattaaacaatcagatgaggtgtatcgccgggggcttcaggcaatacctctgagt
gttgacctttggatacactatataaacttcttaaaagaaacactggaccctggtgatcct
gagacaaacagtactgtaagaggaacgtttgagcatgctgttctagctgcaggaacagat
ttccgatcggacagactgtgggaaatgtatataaactgggaaaatgaacagggaaacctg
agagaagttacagctatttatgatcgtattcttggtattccgacacagctatatagtcat
cattttcagagatttaaagaccatgttcagaataatttgcctagagatcttctaactggt
gaacagtttattcagctaagaagggaattagcgtctgtaaatgggcatagtggtgatgat
ggtcctcctggtgatgatcttccatcaggaatagaagacataactgacccagcaaagctt
attacagaaatagaaaatatgagacatagaatcattgaaattcatcaagaaatgtttaat
tataatgagcatgaagtcagtaaaaggtggacatttgaagaaggtattaaaagaccatat
tttcatgtgaaaccattggaaaaggcacaactgaaaaactggaaagaatacttagaattt
gaaattgaaaacgggactcatgaacgagttgtagttctctttgaaagatgtgtcatatca
tgtgccctctatgaggagttttggattaagtatgccaagtacatggaaaatcatagcatt
gaaggagtgaggcatgtcttcagcagagcttgcactattcatctcccaaagaaacccatg
gtgcatatgctttgggcagcttttgaggaacagcagggtaatattaatgaagccaggaat
atcttgagaacatttgaagaatgtgttctaggattggcaatggttcgtttgagaagagta
agtttagaacgacgtcatggaaatatggaagaagctgaacgtttgcttcaggaagccatt
aagaatgccaaatcaaataatgaatcatcattttatgctatcaaactagcccgacatctt
ttcaaaatacaaaaaaaccttccaaaatcaagaaaggtgcttttggaagctattgaaaga
gacaaagagaacacaaaattatacctcaatttacttgaaatggagtatagtggtgacctc
aaacaaaatgaagacaatatcctaaattgttttgacaaagctatacatggttcattacct
attaaaatgagaattacattttctcagagaaaagtggaatttcttgaagattttggttca
gatgttaataagcttttgaatgcttatgatgaacatcaaacactcctaaaagagcaggat
tctttaaaaagaaaagcagaaaacggatcagaagaaccagaggaaaagaaagcacacaca
gaagatacaacttcgtcatctacacagatgattgatggtgatttgcaggcaaatcaagct
gcatataattatagtgcctggtatcagtacaattatcagactccttggaattatggacaa
tattatcctcctcctccaacctga
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