Bubalus bubalis (water buffalo): 102405233
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Entry
102405233 CDS
T05912
Name
(RefSeq) vascular cell adhesion protein 1 isoform X2
KO
K06527
vascular cell adhesion molecule 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04064
NF-kappa B signaling pathway
bbub04514
Cell adhesion molecules
bbub04668
TNF signaling pathway
bbub04670
Leukocyte transendothelial migration
bbub04933
AGE-RAGE signaling pathway in diabetic complications
bbub05143
African trypanosomiasis
bbub05144
Malaria
bbub05417
Lipid and atherosclerosis
bbub05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
102405233
04668 TNF signaling pathway
102405233
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
102405233
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
102405233
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
102405233
05143 African trypanosomiasis
102405233
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
102405233
05418 Fluid shear stress and atherosclerosis
102405233
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102405233
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bbub04515
]
102405233
04090 CD molecules [BR:
bbub04090
]
102405233
04091 Lectins [BR:
bbub04091
]
102405233
Cell adhesion molecules [BR:
bbub04515
]
Immunoglobulin superfamily
VCAM
102405233
CD molecules [BR:
bbub04090
]
Proteins
102405233
Lectins [BR:
bbub04091
]
I-type lectins (Siglecs)
102405233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2-set
Ig_3
I-set
ig
Ig_2
V-set
C2-set_2
Ig_6
ICAM_N
ICAM1_3_5_D2
Ig_4
Ig_5
C2-set_3
C1-set
Adhes-Ig_like
TrkA_C
Motif
Other DBs
NCBI-GeneID:
102405233
NCBI-ProteinID:
XP_006049875
LinkDB
All DBs
Position
6:complement(42660029..42683057)
Genome browser
AA seq
650 aa
AA seq
DB search
MLRKMFVIFGASDILWMVFAVSQASQIDIFPSESKIFAQIGDSVSLTCSTAGCESPSLSW
RTQIDSPLNGKVKTEGSTSTLIMDPVSFKDEHQYLCTAICKDKKLEKAIRVEIYSFSKDP
EIHLSSLPEVGKPVTVTCLVPDVYPFERLEIELLKGNRSMKVQEFLEPSEKKAQETKSLE
VTFSPTDEDIGTALVCQATLRIYDDDSPPKVRKTTKELEVYISPKDTAISVNPSTRLQEG
DSVTMTCTSAGLPAPRILWSKKLDNGNLQLLSENATLTLISMRAKDSGIYVCEGDNPVGK
DRKEVKLIVQEKNFTVEISPGPQIAAQVGDSVVLTCDVRDCESPSFSWRTLIDSPLNGNV
RSEGSKSTLTLSPVSFENEHFYLCTVMCGQKKLEKRIQVKPYSFPSDPEIEMSGPLVSGN
PVTVSCRVPNVYPSDWLEIELFKGESIMMNKIFSKDVSKKALETKTLEKTFIPTTEDIGN
VLVCLARLPIDEMEFELKQRQSTQTLYVNVAPRDTTILVSPSSILEEGSSVNMTCSSNGL
PAPQILWSRQLRNGDLQPISENATLSFMSTKMEDSGIYVCEGINQVGTSRKEVNLIIQGR
ESNKDYFSPELLVLYCASSLIIPAIGMIIYFARRANMTGSYSLVEAQKVC
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgcttaggaagatgtttgtgatctttggagcctcagatatactttggatggtgtttgca
gtttctcaagcttcccaaatcgacatattcccaagtgaatccaaaatttttgcgcagatt
ggtgactctgtttcactgacttgcagcacagcaggctgtgagtctccatcattgtcttgg
agaactcagattgacagtccactgaatggaaaggtgaaaactgaggggagcacatccacg
ctgatcatggatcctgttagtttcaaggatgaacaccagtacctgtgcacagcgatttgc
aaggataagaaactggagaaagcaatccgagtggagatctactctttctctaaggatcca
gagattcatttgagtagcctcccagaggtcgggaagccagtcacagtcacatgtttggtg
cctgatgtttacccatttgaaaggctggagatagagttgttgaaaggcaaccgttccatg
aaagtacaggaatttctggagccttcagaaaaaaaggcccaggaaacaaagagcttggaa
gtgaccttctcacctactgatgaggatattgggacagctcttgtttgtcaagctacatta
cgcatttatgatgatgattctccacccaaagtaaggaaaactacaaaagaactggaagtc
tacatctcccccaaagacacagctatatccgtgaatccctccacgaggctgcaggaaggc
gactctgtgacgatgacctgtaccagtgcaggtctgccagctccacggattctctggagc
aagaaattagacaatgggaatctacagctcctttctgagaatgcaactctcactttaatt
tctatgagggcaaaagattctgggatttatgtgtgtgaaggagataaccctgttgggaaa
gacagaaaagaggtgaaattaattgttcaagagaaaaactttactgttgagatctctcct
ggaccccagattgctgctcaggttggcgactcagtcgtgttgacctgtgatgtcagggac
tgtgagtccccatctttctcttggagaaccctgatagacagccctctgaacgggaatgtg
aggagcgagggctccaagtccacgttgaccctgagccctgtgagttttgagaacgaacat
ttctacctgtgcactgtgatgtgtgggcaaaagaaactggaaaagagaatccaggtgaag
ccctactccttccctagtgatccagaaattgaaatgagtggtccattagtgagtggaaac
ccagtcactgtaagctgcagagttcctaatgtgtatccttctgactggcttgagattgaa
ttgtttaaaggggagagtattatgatgaataaaatcttctcaaaagatgtaagtaagaaa
gccctagagaccaagactttggagaagaccttcatccccaccactgaagatattggaaat
gttcttgtttgtctggctcggttaccaattgatgaaatggaatttgaactcaaacaaagg
cagagtacacaaacactttatgttaatgttgctcccagggatacaaccatcttggtcagt
ccctcctccatcctggaggaaggtagttctgtgaatatgacatgctctagcaatggtctt
ccagctccccaaatcttgtggagcaggcagctaaggaatggggatctacagcctatttct
gagaatgcaactctcagcttcatgtctacaaaaatggaagattctggtatttatgtctgt
gaaggcattaaccaggttggaacaagcagaaaagaagtcaacttaattatccaaggaaga
gaaagtaacaaggactatttttctcctgaacttctggtgctctattgtgcatcctcctta
ataatacctgccattggaatgattatttactttgctagaagagccaacatgacagggtca
tacagtcttgtagaagcacagaaagtgtgctaa
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