KEGG   Bubalus bubalis (water buffalo): 102405306
Entry
102405306         CDS       T05912                                 
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
bbub  Bubalus bubalis (water buffalo)
Pathway
bbub03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102405306
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbub03021]
    102405306
   03019 Messenger RNA biogenesis [BR:bbub03019]
    102405306
Enzymes [BR:bbub01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     102405306
Transcription machinery [BR:bbub03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102405306
Messenger RNA biogenesis [BR:bbub03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     102405306
SSDB
Motif
Pfam: Ssu72 NYN_YacP CODH_A_N
Other DBs
NCBI-GeneID: 102405306
NCBI-ProteinID: XP_044784905
LinkDB
Position
16:34046860..34047781
AA seq 194 aa
MSFSPLKVAVVCMSNMNRSMEAHSILRKKGFSVRSFGAGSRVRLPGTARNLPVVYDFSTT
YEQMRKDLVRIDRERYTSNGILHILGRNERIKPRPERFQECRDHFDVIFTCEEKVYDRVI
EELWVREQETCQPVHVINVDMDDNTEDATLGSLIICELCERLQQAEDMEGSLAELLLAVE
RKTGRSFLHTVCFY
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtccttctcccccctcaaggtggctgtggtctgcatgagcaacatgaacaggagcatg
gaggcccacagcattctcaggaagaaaggtttcagtgtcaggtcttttggagccggatcc
cgagtcaggctcccaggaactgcgcgcaacctccctgtggtttatgatttctccaccacg
tatgaacagatgcgcaaggaccttgtgcgcatagaccgagaacgctataccagcaacggc
atcttgcacatcttgggaagaaacgagagaatcaagcctcgcccggaaagatttcaagag
tgcagagatcactttgatgtcatcttcacctgcgaggagaaggtctatgaccgggtgata
gaagagctgtgggtccgagagcaggagacttgccagcctgtgcacgtgatcaacgtggac
atggacgacaacacggaggacgccacccttgggtctctgatcatctgtgagctctgcgaa
cgcctccagcaggcagaggacatggaaggcagtctggctgagctgctcctggcagtggag
aggaaaacaggaaggagctttctgcacacggtctgcttctactga

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