Bubalus bubalis (water buffalo): 102406141
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Entry
102406141 CDS
T05912
Symbol
DDX23
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102406141 (DDX23)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102406141 (DDX23)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102406141 (DDX23)
Spliceosome [BR:
bbub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102406141 (DDX23)
Complex C
U5 SnRNP specific factors
102406141 (DDX23)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
Mycobacteriophage_73
Motif
Other DBs
NCBI-GeneID:
102406141
NCBI-ProteinID:
XP_006054617
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Position
4:complement(89350262..89365256)
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AA seq
820 aa
AA seq
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MAGELADKKDRDASPSKEERKRSRTPDRDRDRDRDRKSSPSKDRKRHRSRDRRRGVSRSR
SRSRSKSTERDRRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK
DRDSRKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQE
VEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE
KDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLG
RGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQK
KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL
AQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVL
SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYR
QTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILE
QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA
TDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK
QAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagctggctgataagaaggaccgtgatgcatcaccttccaaggaggaaagg
aagcgatctcggactcctgacagagaccgcgatagagaccgagaccggaagtcttcccca
tctaaagacaggaaacggcatcgttcaagggataggcgtagaggagtcagccgttctcgc
tcccgttcccgatccaagtctacggaaagagatcgccggcacaaagagcgagagcgggat
aaggaacgagatcggaataagaaggaccgagaccgggataaggatgggcaccgaagggac
aaggaccgcaagcgatccagtttatctcctggccgaggaaaagattttaaatctcggaaa
gacagagactctagaaaggatgaagaggatgaacatggtgataagaagcctaaggcccag
ccattatccctggaggaacttctggccaaaaaaaaggctgaggaggaagctgaggccaag
cccaagttcctctccaaagcagaacgagaggctgaagccctgaagcgacgacaacaggag
gtggaggaacggcagaggatgcttgaagaagagaggaagaaaaggaagcagttccaagac
ttgggcaggaaaatgttggaagaccctcaggaacgggaacgtcgggagcgcagggagagg
atggagagggagaccaatgggaatgaggatgaggaagggcggcagaagatccgggaggag
aaggataagagcaaggagctgcacgccattaaggagcgttacctcggtggcatcaagaag
cggcgccggacaaggcatctcaatgaccgcaagtttgtctttgagtgggatgcgtctgag
gacacttccattgactacaaccccttgtacaaagaacggcaccaggtacagttgttgggg
cgaggcttcattgcaggcattgacctgaagcagcagaaacgagagcagtcgcgtttctat
ggagacctaatggagaagaggcggacgctggaagaaaaggagcaggaggaggcgagactc
cgcaaacttcgaaagaaggaagccaagcaacgctgggatgatcggcattggtcccagaaa
aagttggatgagatgacggacagggactggcggatcttccgcgaggactacagcatcacc
accaaaggtggcaagatccccaatcccatccggtcctggaaagactcttctctgcctcca
cacatcttggaggtcatcgataagtgtggctacaaggagccaacgcctatccagcgtcag
gcaattcccattgggctacagaatcgtgacatcattggagtggctgagactggcagtggc
aagacagcagccttcctcatcccgttgctggtctggattaccactctccccaaaattgac
aggatcgaagagtccgaccagggcccttatgctatcatcctggcccccactcgtgagctg
gctcagcagattgaggaagagaccatcaagtttgggaagccgctgggcatccgcactgtg
gctgttattggcggcatctccagagaagaccagggcttcaggctgcgcatgggttgtgag
atagtgatcgctaccccgggacgtctgatcgacgtgctagagaaccgctacttggtgctg
agccgctgcacctatgtggttctggacgaggcagacaggatgattgacatgggctttgag
ccagacgtccagaagatcctggagcacatgcctgtcagcaatcagaagccggacacagat
gaggccgaggaccctgagaagatgctggccaactttgagtcaggaaaacacaagtaccgc
caaacagtcatgttcacggccaccatgcccccagcggtagagcgtctggcccggagctat
cttcggcgacctgctgtggtatacattggttctgcaggcaagccccatgaacgtgtggaa
cagaaagtcttcctcatgtcagagtccgaaaagaggaaaaagctgctggcaatcttggag
caaggctttgatccacccatcatcatttttgtcaaccagaagaagggctgtgatgttttg
gccaaatccctggagaagatggggtacaacgcttgtacgctgcacggtggaaaaggccag
gagcagcgagagtttgcactgtccaacctcaaggctggggccaaggatattttggtggct
acagatgtggcaggtcgtggtatcgacatccaagatgtatctatggtcgtcaactatgac
atggccaagaacattgaggattacatccaccgcattggccgcacggggcgagcaggcaag
agtggtgtggccatcaccttcctcaccaaagaggactctgctgtgttctatgagctgaag
caagccattctggagagcccggtgtcctcctgccccccagagctggccaaccaccctgac
gcccagcacaaaccaggcaccatcctcaccaagaagcgccgggaagagaccatctttgcc
tga
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