Bubalus bubalis (water buffalo): 102406262
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Entry
102406262 CDS
T05912
Symbol
COL24A1
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04820
Cytoskeleton in muscle cells
bbub04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102406262 (COL24A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102406262 (COL24A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102406262 (COL24A1)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102406262 (COL24A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102406262
NCBI-ProteinID:
XP_044800694
EnsemblRapid:
ENSBBUG00015005559
LinkDB
All DBs
Position
6:57694383..58091623
Genome browser
AA seq
1722 aa
AA seq
DB search
MHLGAHRTRRGQVSHTAKSKLLLHFIVLCVSGGTVHAQDQGIDILHQLGLGGKDVRHSSS
VTAVPPSSTPLTQGVHVTESGVILTNDSYIETPLVKILPVNLEQPFTILIGLQSYRVNNA
FLFSIRSKNRLQLGVQLLPKKLVVYLGGKQSVFFNYSVHDERWHSFAIAVTNQDVSMFVE
CGKKYFSRETLSEVQTFDSNSVFTLGSMNNNSVHFEGVVCQLDIIPSAEASASYCRYVKQ
QCRPETSLPHTTIVSTKIPENSLLPKRLGEKVLSQDTLTENKSVLDFTNNDSVTVNKQQE
HQISRSQLTSLHSRNVSAMDLVNHVIQTKELITEQLIQANLSLPMSHRSLNEPRKKNKDK
FISLLNVSDNITQHNDKITGLSPLKKISSSLPHIKQDAIKNLKKAITANLHTNELIELQQ
ILNTTLYRVTDEPSVDNHLDLRKEGEFDPDATYPIENSYETELYDYYYYYEDLNTVLEME
NLRGPKGDTGPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPDQ
ALSGEKGDQGLSGLMGPPGMQGVKGLKGHPGLPGLQGEQGIPGFTGNIGSRGYPGRQGLA
GPDGNPGPKGVRGFIGSPGEVGQLGPEGERGVPGIRGKRGLKGRQGFPGDFGDRGPAGPD
GSPGLIGSTGPPGFPGLRWCSRIPFFLIAFQGSVGPVGPIGPSGIPGPMGLSGNKGLPGI
KGDKGEQGIAGEQGETGYTGDKGAVGFPGPPGMRGKPGPSGQTGDPGPQGPSGPPGPEGF
PGDIGIPGQNGPEGSKGFIGSRGPSGPPGLKGTQGEEGPTGSFGELGPRGKPGPKGYAGE
PGPEGLKGEVGDQGNIGKIGETGPVGLPGEVGVTGSIGEKGERGSPGPVGPQGEKGAMGY
PGPPGVPGPMGALGLPGHVGARGPPGIPGPKGRRGPRGPDGPLGEQGIQGTKGETGDQGK
RGPHGLIGKTGNPGERGVQGKPGLQGPPGTTGDRGLTGEPGPRGPQGDAGPPGEMGAEGP
PGTEGESGLQGEPGTKGDVGPVGSVGAAGEPGLWGEPGAPGEEGLQGKDGLKGNPGGRGL
PGEDGEKGETGLPGTTGPLGGPGLMGPPGPEGITGIPGQRGRPGKKGDKGQMGPAGEIGS
RGAPGQIGESGLKGARGTRGAVGPLGLMGPAGEPGILGYRGHEGQPGLSGLPGPKGEKGY
PGEDNTILGPPGPRGEPGPVGEQGERGEPGAEGYKGHVGIPGPRGATGQQGPPGEPGDQG
EQGLKGERGSEGPKGKKGAPGPSGKPGIPGLPGLPGPKGMQGYHGAEGISGNPGKIGLPG
KHGLPGIRGSPGRTGLTGSLGPQGAKGSSGPPGSPGVQGPKGEQGLPGQPGIPGKRGHQG
AQGDQGPCGESGMKGQPGEHGIQGLMGFQGFPGPKGPQGDAGIVGISGPKGPVGQRGNTG
PFGREGIIGPKGRTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPGPRKQMDINAAIQALI
ESHTALQMESYQNTEVTLIDHSAEIFKTLNYLGNLLHTIKHPLGTRDNPAQICKDLLNCE
HTVSDGKYWIDPNLGCPSDAIEVFCNFSAGGQTCLSPISVTKLEFGIGKVQMNFLHLLSS
EATHIITIHCLNTPVWTSPQTSGSGLTLGFKGWNGQIFEENTLLEPKVLSNDCKIQDGSW
HKAKFLFHTQDPNQLPVIEVQKLPHLKTERKYYIESSSVCFL
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccacaggacaaggcgtggacaggtctcccacacggcaaaatcgaaa
ctgcttcttcattttattgtactatgtgtgtcagggggtactgttcatgcacaagatcaa
ggcatagatattcttcatcaactaggccttggaggcaaagatgtaagacactcttcatca
gtgaccgctgtaccaccatcatctacaccattaactcagggggtccatgtaacagaatcg
ggtgtcattttaacaaacgattcctatattgaaacacctcttgtgaaaattttaccagtc
aacttagaacagccatttacaatattaattgggttgcagtcatatagagtaaacaatgca
tttctcttcagcattagaagtaaaaatagactgcaattaggagtacagttattacctaaa
aaattagtggtataccttggaggaaagcagtctgtctttttcaactacagcgttcacgat
gagcgatggcattcatttgccattgctgttaccaatcaagatgtctcaatgtttgttgaa
tgtggaaagaaatattttagcagagagactctttcggaagttcagacctttgattctaac
agtgtgtttaccttgggaagtatgaataataattctgtccattttgaaggagtagtatgt
cagttggatattattccttctgcagaagcatctgcaagctattgcagatatgtgaaacag
caatgtcgccctgagacaagccttcctcatacaactattgtatcaactaagatacctgaa
aactctctcctgcccaaaagattgggtgaaaaagtactgtcacaggacacacttactgaa
aacaaaagtgttctagatttcacaaataatgattctgtgacagtgaataaacaacaagaa
caccagatatcaagatctcagttaacttctcttcattcacggaatgtctctgctatggat
cttgtgaaccatgtgattcagaccaaagaattgatcactgagcaacttattcaggcaaat
ttaagcctgccaatgtcccatcgtagcctcaatgagccaaggaaaaaaaacaaggataaa
ttcatttctcttctaaatgtgtcggacaatatcacacagcataatgataaaataactggt
ctgtcaccacttaagaagatatcatctagtcttccacatataaaacaagatgcaattaag
aatctcaagaaggctatcacagcaaatctgcacactaatgaacttatagaactgcagcag
attttaaacacaaccttatacagagtgacagatgagccatctgtggataatcaccttgat
ctaaggaaggaaggtgaatttgatcctgatgctacttatcccatcgaaaatagctatgaa
actgagctttatgattattattattattatgaggatcttaatacagtgctcgaaatggag
aatctaagagggccaaaaggggacactggacctcctggtccccctggcccagcaggcatc
ccaggtccatcaggaaagagaggtccacggggcataccagggccacatggaaatcctggg
ttacctggattaccaggtccaaagggccctaaaggagatccaggtttttccccagatcaa
gctctttctggagaaaagggtgatcaaggtctttctggattaatggggccccctggtatg
caaggtgttaagggtctcaaggggcatccaggactcccaggactccaaggggaacaagga
attccaggattcactggtaatattggttcacgtggttaccctggcaggcagggtttagct
ggaccagatggtaatccaggacctaaaggtgtacgaggtttcattggctctcctggagaa
gtaggacaactgggacctgaaggagaaagaggtgttcctgggatccgtggaaagaggggt
cttaagggaagacagggttttccaggtgactttggagacagaggccctgcaggtcctgat
ggcagtcctggacttataggtagcactggtcctccgggatttcctgggcttagatggtgc
tcaaggatacctttctttcttattgctttccagggcagtgttggccctgtgggaccaatt
ggaccttctggaatccctggcccaatgggtctttcgggcaataagggcctacctggaatc
aaaggtgataagggtgaacaaggcattgcaggagagcaaggagaaacagggtatactgga
gacaagggtgctgtgggttttcctggaccaccagggatgagaggaaagccaggaccttca
ggccaaacaggtgacccaggaccccaagggccatctggccctccaggaccagagggtttt
cctggagatattgggatccctggacaaaatggccctgaaggatcaaagggattcattgga
agcagagggccttctggacctcctggtctcaaaggaactcagggagaagaaggaccaact
ggatcctttggagaactggggccaagaggaaaaccaggtccaaaggggtatgctggtgaa
ccaggaccagaaggcttgaagggagaagtaggagatcaaggaaacattgggaagattggc
gaaacaggacctgttggtttacctggagaagttggagtgactggaagcattggtgaaaag
ggagagcgtggaagtccaggtccagtaggtccccagggggaaaagggtgcaatgggatat
ccaggtcctcctggagttccaggacccatgggtgccctgggattacctggtcatgtcggg
gcaagaggaccacctgggattccaggtcctaaaggacgaagaggaccaagaggaccagat
ggtcccttaggagaacagggtatacaaggtaccaagggtgaaacaggagatcaaggaaaa
agagggcctcatggtcttattggtaagactggaaaccctggagagagaggagttcaagga
aaaccaggtttgcaaggacccccagggactactggagacaggggacttacaggagaaccg
ggaccacgaggaccacaaggtgatgctggacctcctggagaaatgggtgctgagggacca
ccaggtactgaaggagaatctggtctgcaaggcgagccaggcacaaagggagatgttgga
cctgtgggcagtgttggagctgctggggagccagggttatggggtgaaccaggagctcct
ggagaagaaggtctacagggtaaagatggattgaaggggaacccaggaggaaggggactt
cctggagaggatggagaaaaaggagagacaggcttaccagggaccacagggcctttgggt
ggaccaggtctgatgggccctccgggacctgaaggaattacaggaattccaggacaaaga
ggtcgtccaggaaagaagggtgataaaggacaaatggggcccgcaggagaaattggaagc
agaggtgctcccggacaaattggggaaagtggtcttaagggtgccagaggaactagaggt
gctgtgggacctttaggattgatgggacctgctggagaacctggaattctaggatatagg
ggccatgaaggtcaaccgggactttctgggttgccaggacctaaaggagaaaagggttat
ccaggagaagataatacaatcctaggaccacctgggcctcggggtgaaccaggtccagtg
ggagaacaaggagagagaggagagcctggagcagagggatataagggccatgtaggtata
ccaggaccaagaggtgccactggacagcaagggcccccaggtgagccaggtgaccagggt
gaacaaggactaaaaggagagagaggatctgaaggtcctaaagggaaaaaaggagctcct
ggtccttctgggaaacctgggattcctggacttccaggactacctgggccaaaaggcatg
caaggataccatggagcagaaggcatttcaggaaaccctggaaaaattgggctaccagga
aaacacggacttcctggcatcagaggcagcccaggaagaacaggactgactggatctcta
ggtcctcaaggagcaaagggttcgtcaggcccaccaggaagcccaggagttcaaggccca
aagggtgaacaagggctacctggtcaacctggaattccaggtaaaagaggtcaccaagga
gcacaaggtgatcaaggaccatgtggagagtctggcatgaaagggcaacctggagaacat
ggtattcaaggtttgatgggtttccaaggattcccaggtcccaaaggtccccagggagat
gctggcattgttggaatatcaggtcctaaaggccctgttggacaaaggggaaacactggc
ccctttggcagagaaggtataataggtccaaagggtagaactggacccagaggtgaaaaa
ggctttagaggcgaaactggtccccaaggaccaagaggtcaaccagggcctccaggtcca
cctggagcaccaggcccaagaaaacaaatggatatcaatgctgctattcaagccttaatt
gaatcacatactgccctacagatggagagctaccagaatactgaagtgactttaattgac
cacagtgcagagatcttcaaaaccttgaactatcttggcaatttactacacaccatcaag
catcctcttggcacacgagataatccagcacaaatctgcaaagatttgcttaactgtgaa
cacacagtatcagatggaaaatactggattgatccaaatcttggatgcccttcagatgcc
attgaggttttctgtaatttcagtgctggtggtcagacatgtttatctcctatctctgtg
acaaagttggagtttggaatcgggaaagtccagatgaacttccttcatttactgagctca
gaagccacccatatcatcaccattcattgtctaaacactccagtgtggacaagtcctcag
acaagtggctcaggattgactcttggtttcaagggatggaatggtcagatttttgaagaa
aacactctacttgaacctaaagtgctttcaaatgactgcaagattcaagatggcagctgg
cataaggcaaaattcctttttcacacccaggaccctaatcaacttccagtaatagaagta
caaaaacttcctcatctcaaaaccgaacggaagtactacattgaaagcagttccgtatgc
tttctctaa
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integrated database retrieval system
