Bubalus bubalis (water buffalo): 102406834
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Entry
102406834 CDS
T05912
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102406834 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102406834 (DDX42)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102406834 (DDX42)
Spliceosome [BR:
bbub03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102406834 (DDX42)
Complex B
102406834 (DDX42)
Complex C
U2 SnRNP specific factors
102406834 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
102406834
NCBI-ProteinID:
XP_006041685
LinkDB
All DBs
Position
3:complement(14987726..15023824)
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AA seq
947 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGAASSASGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASATKGIPGFGSPGNLSSAPVTY
PSAGAPGVNNTASGSNSREGTGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGGRHGDGYRYPESSSRHTDSRRHADGHPHGENRHGGGGGRHGESRGANDGRNGESRK
ESCNRESKMDPKVDSPKVDKMDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccccggcaccaagaggggctttggttttggcggtttcgcc
atcagtgctggcaagaaggaggagcccaagctcccgcagcagtcccacagtgcctttggg
gcagccagctctgcttccggctttggaaagtcggctccaccacagctcccttctttctac
aaaattggttctaaacgggccaacttcgatgaagaaaatgcatattttgaagatgaggaa
gaagattctagtaacgttgatttaccttacattcctgctgagaactcacctacccgccag
caattccattccaagccagtagactctgacagtgatgatgatcccttagaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtatatggcagagaatccaactgctggtgtggttcaagaggaggaggaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgagaaaaatttttacaatgaa
catgaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaac
cttcgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaagtctgagtacacacagcccactccaatacag
tgccagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaaccgctgccttcatctggcccatgttgattcatataatggaccagaaagaa
ctggaaccaggtgatggaccaattgcagtgattgtgtgtcccactagggagctctgccag
cagatccatgcagagtgtaagcggtttgggaaggcatacaatcttcgatcagtggctgtg
tatggaggagggagcatgtgggaacaggccaaggcccttcaggaaggggcagagattgtt
gtttgtacaccaggtcgactgattgatcatgtgaagaagaaagctaccaaccttcagaga
gtctcctaccttgtgtttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagatcgaaaaactggccagagacatcctgattgaccccattcgtgtggta
cagggagatattggagaggcaaatgaagatgtgactcagattgtggagattctccattct
ggacctagtaaatggaactggctcacccggcgtctagtggagtttacctcttcagggagt
gtcctcctgtttgttactaagaaagccaatgctgaagagctggccaataaccttaagcag
gagggtcataatcttggcctgctccatggtgacatggatcagagcgaaagaaacaaggtt
atttcagactttaagaaaaaggacatccccgtcctagtggccacagacgttgcagcccgt
ggtctggacatcccttcaattaagactgtcattaactatgatgtggcacgagatattgac
acccatactcataggattggccgcacaggacgagcgggtgagaagggcgtggcctatacc
ttgctgacacccaaggacagcaattttgctggtgaccttgttcggaacttggaaggagcc
aatcagcatgtttccaaggagctcctagatctggccatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaggggaaaaagctgaacattggtggaggaggcctgggctac
cgggagcggcctggccttggctctgagaactcggaccgaggaagtaacaacaatgtaatg
agcaattatgaggcctacaagccctccacgggagccatgggagaccggctgacggcgatg
aaagcggctttccagtcacagtacaagagtcactttgttgctgccagtttaagcaaccag
aaggctggaagctctgcggctggggcaagcggatggactagtgcagggagcttgaattca
gttccaactaattcagcccagcagggccacagcagtcctgacagccccattgccagtgcc
acgaagggtatcccaggctttggcagtcctgggaacctcagcagtgccccggtgacctac
ccttctgctggagctccgggggtcaacaacacagcttcagggagtaacagccgagaaggg
actgggggtggcaatgggaaaagagagcgatatactgagaaccggggtggaagtcgtcac
agtcatggagagagtggcaatcggcatggcgatagcccacggcatggagatgggggtcgc
catggagacgggggtcgccacggagatggataccgctacccagagagcagcagccgtcac
accgatagccgccgtcatgctgatggtcatcctcacggagagaacaggcatggagggggc
ggaggccgacacggggagagccggggtgccaatgacggtcggaatggtgaaagcaggaag
gaaagttgtaatcgtgaaagcaagatggaccccaaggtggacagccccaaggtggacaag
atggacagcaagacagataagactcctgatggttttgctgtccccgagccgcccaagcgc
aagaaaagtcggtgggacagttag
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