Bubalus bubalis (water buffalo): 102407198
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Entry
102407198 CDS
T05912
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102407198 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102407198 (MTREX)
03041 Spliceosome [BR:
bbub03041
]
102407198 (MTREX)
03009 Ribosome biogenesis [BR:
bbub03009
]
102407198 (MTREX)
03016 Transfer RNA biogenesis [BR:
bbub03016
]
102407198 (MTREX)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102407198 (MTREX)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102407198 (MTREX)
Spliceosome [BR:
bbub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102407198 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102407198 (MTREX)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Pre-60S particles
Helicases
102407198 (MTREX)
Transfer RNA biogenesis [BR:
bbub03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102407198 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102407198
NCBI-ProteinID:
XP_006074217
LinkDB
All DBs
Position
19:complement(23543939..23639567)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGKCFDGKLQSESTNVGKN
KRDADFEGADEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWAAGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccacggct
cctggagccaaaaaagacaaggagaaggggaagtggaaggggcctccagggtctgcagaa
aaggccggaaaatgttttgatggtaaattacaatcagagtcaactaatgttggaaaaaac
aagagagatgcagacttcgagggtgctgatgaacctatttttggaaagaaacccagggtg
gaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaaggtacag
tcagttgaaactgtcgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgagttggaaaagctgcaaaggaatatccattcattcttgatgct
tttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatctgcacat
acatcagcaggaaaaactgtttgcgctgaatatgccattgcattggcgctaagagaaaaa
caacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacagca
tcctgtcttgttatgaccacagagattttgagaagtatgctgtacaggggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtcgtatgggaagaaactattattttgcttcctgataacgttcactatgtctttctt
tcggctactattccaaatgcccgacagtttgctgagtggatttgccacttacataaacag
ccttgtcatgtaatttacacagattatcggcctactccattacagcactatatttttcca
gccgggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagatcagaag
gggcgaaaaggaggaacaaaaggtccatcaaacgtattcaagattgtgaagatgattatg
gaaagaaattttcaacctgttattattttcagttttagtaagaaagattgtgaagcttat
gcacttcaaatgaccaaattagatttcaacacagatgaggaaaagaagatggttgaagaa
gttttcagtaatgcaattgactgcttgtctgatgaagacaaaaagctccctcaggttgaa
aatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaatgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatatattcagatgtctggt
cgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagatgaaaag
atgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaatagtgct
ttccatttgacctacaacatggttttgaacttactacgagtagaagaaattaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtggtcatctactacaagattagacagcagcttgccaaattgggtaaagaaattgaagaa
tacattcacaaaccaaaatattgcttaccctttctacaaccaggtcgtttggtaaaggtg
aagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaatcaaat
gtcaagcctaattctggtgaactggatccattatatgtagtagaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaagccagctaaacctgatgag
aaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagcagtgtt
agactttacatccctaaagacctacgaccactggacaatagacagagtgttctaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttattagaccctattgatgac
atgggcattcaggatcaaggactgaaaaaagttatccagaaagtagaggcctttgagcat
cgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtatacactttgt
gaaaaaaaagcacagattgcaatagacattaaatctgcaaagcgagaactaaagaaagca
agaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggaggttgggt
tttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgtgagataagcagt
gctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctctctgca
gaacaagcaacagcactactgagctgctttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggagacttatctaagctcattt
aaacctcacttaatggatgtagtatacacctgggcagctggcgctacatttgcccatatc
tgcaaaatgacggatgtctttgaaggcagcataatccgttgtatgaggcgcctggaagaa
ctacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
tttgcagaaggaatcaccaaaatcaagagagatattgtgtttgccgccagcctctactta
taa
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