KEGG   Bubalus bubalis (water buffalo): 102407205
Entry
102407205         CDS       T05912                                 
Symbol
GEMIN5
Name
(RefSeq) gem-associated protein 5 isoform X1
  KO
K13133  gem associated protein 5
Organism
bbub  Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbub03019]
    102407205 (GEMIN5)
   03041 Spliceosome [BR:bbub03041]
    102407205 (GEMIN5)
Messenger RNA biogenesis [BR:bbub03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102407205 (GEMIN5)
   mRNA cycle factors
    P-body specific factors
     102407205 (GEMIN5)
Spliceosome [BR:bbub03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    102407205 (GEMIN5)
SSDB
Motif
Pfam: GEMI5_RBS TPR_GEMI5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_WDR5 Beta-prop_EML_2 WD40_Prp19 WD40 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st DSE1_N WDR55 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 EIF3I Beta-prop_RIG_1st Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_NOL10_N WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C PAC11 WD40_RFWD3 ASA1 MIOS_WD40 Beta-prop_WDR35_TULP_N Beta-prop_WDR41 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_EIPR1 WD_LRWD1 DNAI3_WD Beta-prop_WDR75_2nd TPR_IF140-IFT172 YdeJ
Other DBs
NCBI-GeneID: 102407205
NCBI-ProteinID: XP_006076050
LinkDB
Position
9:45030832..45070476
AA seq 1509 aa
MGQEPRTLPPSPNWYCSRCSDAVPGGLFGFAARTSVFLVRVGPGADAIPGTPPFRVIGEL
VGHTEKVSGFTFCHHPGQYNLCATSSDDGTVKIWDVGTKTVVTEHALHQHTISALHWSPR
VKDLIVSGDEKGVVFCYWLNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIID
ISKKGEVMHRLRGHDDEIHSIAWCPLSGEDCLSINQEENSEEPEMPNGKVITQTPVTKGC
YLATGSKDQTIRIWSCSRGRGVMTLKLPFLKRRGGGVDPTVKERLWLTLHWPKDQPTQLV
SSCFGGELLLWDLTQSWRRKYTLFSGSSEGQNHSRIVFNLCPLQTEDDKQLLLSISMDRD
VKCWDMATLECCWTLPSLGGFAYSLAFSPVNTGCLAIGVGDGMIRVWNTLSIKNNYDVKH
FWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYSLAWGP
PVPAVALGEGDRPSLTLYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHTE
ISWKADGKIMALGNEDGSIEIFKVPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYLMA
SGSNNAVIYVHNLQTVIESNPESPVTITEPYRTLSGHTAKITSLAWSPHHEGRLVSASYD
GTAQVWDTLQEEPLCNFRGHRGRLLCVVWSPLDPDCIYSGADDFCVYKWLTSMQEHSRPP
QGKKSIELEKKRLSQPKPKPKKKKKPTLRVPVRQELCDGNEEESVKESLGPIENGVSDQE
TEEEAREPEPPCGVTAAVSKEPIICTPAALGFEKSKSTINNKVTLLKKEVPKEKPEALIK
KRKARSMLPLSTSLDHRSKEELHQDCLVLATTKHSKAGPNEDVSTDLEERFHLGLFTDRA
TLYRMIEVEGKSHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPVAGYHV
WVWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAVAKARLRPEDP
IIKDLYLSWGAILEKDGHYALAAKCYLGATSAYDAAKVLAKKGDAASLRTAAELASIVGE
NELSASLALRCAQELLLARNWVGAQEALQLHTSLKGQRLVFCLLELLSKHLEEKQLSEGK
SSFSSYNAWPTDSEGSFVERVTAVWKSTFSLDSPEQYQAAFQQLQNIKYPSATSNTPSKQ
LLLHICHDLTLALLSQEAGSWDAAVEGLLRAVIRSYDSGNFTIMQEVHSAFLPQGCDHLR
DKLGDHQSPTIPAFKSLKAFFIYGRLYEFWWSLSGPCPESSVWLRATHRSKTSTGQSQEV
DSVSPEETDPKASQPEPSRTPELDVRLTEEGEQMQNACKELLSEKHAGLQNAQRTVAEVQ
ETLAEMIRQHQKTQLCKSTANGPDKNEPEQEGESLSHPQNQCKEEKNEPVSLPELTKRLT
EANERIAKLPESIKTWPFPDVLECCLILLHIGSQCPSFVTREMQQQAQEFLQKYGNTKVY
KRHYQTLYT
NT seq 4530 nt   +upstreamnt  +downstreamnt
atgggacaggaaccgcgcacgttgccgccctcccctaactggtactgctcccgatgcagc
gatgccgtgcccgggggcctcttcggtttcgcggcgcggacttcggtcttccttgtccgc
gtgggcccgggcgcggacgcgatcccagggacgcccccatttcgagtcataggcgagttg
gtgggacacacggaaaaggtgtctggcttcacgttttgtcatcacccgggtcaatacaac
ctctgcgccaccagctccgatgatgggactgtgaaaatctgggatgtagggacaaaaaca
gttgtgacggaacatgcactccatcagcatacaatatcagcattgcattggtctcctcga
gtaaaggatctgatagtatctggagatgaaaaaggagtagttttctgttactggcttaac
agaaatgacagccagcacctctttatagaacctaggacaattttctgtcttacttgctcg
cctcatcatgaagatttagtagccattggctacaaggatggcatagtggttataattgac
atcagcaagaaaggagaagttatgcacaggcttcgaggccacgatgatgagatccattcc
atagcctggtgtcccctgtcgggtgaagactgtttatccataaatcaagaggaaaattca
gaagaacctgaaatgcccaatggaaaagttataacacaaactccagtaacaaaaggctgc
tacttagccactgggagcaaagaccagaccattcggatctggagctgctctagaggccga
ggggtgatgactttgaaactgccctttcttaaaagaagaggagggggtgtagacccaact
gttaaagagcgcctttggttgacactccattggcccaaggatcagccaactcagctggta
tccagctgttttggaggtgaactgctgctatgggatctcactcagtcttggagacggaaa
tataccctctttagtggttcatcagaagggcaaaatcattcaaggattgtgtttaattta
tgtcctctgcaaactgaagatgacaaacagctgctgctttccatatcaatggacagagat
gtaaaatgttgggacatggccactctggagtgctgctggaccctgccttccctcggtggg
tttgcctacagtctggctttctctcctgtgaacacaggctgcttagctataggcgtcggg
gatggcatgatccgcgtatggaatacactctccataaagaacaactatgatgtgaaacat
ttttggcaaggtgtcaagtccaaggttacagcgctgtgctggcacccaaccaaggaaggc
tgcttagcctttggaactgatgatggaaaagtgggattgtacgacacctactccaacaaa
cctccacagatttccagcacgtatcacaagaaaactgtgtactcgttagcctggggacca
ccagtacccgccgtggcactaggagaaggagacagaccttccctcactttatacagttgt
ggaggagaagggattgtcttacagcacaacccttggaagcttagtggagaggcctttgac
atcaataaactcatcagggacaccaattcaatcaaatacaaattgcctgtacacacagag
atcagctggaaagcagatggcaaaatcatggctcttggcaatgaagatggatcaatagaa
atattcaaggttcctaacttgaaactgatctgcaccatccagcagcatcataagcttgtg
aataccattagctggcatcatgagcatggcagccagccagaactgagctatctgatggcc
tctgggtccaacaatgcagtcatttatgtgcacaacctgcagactgtcatagagagcaat
cctgaatctccagtgaccattacagagccctaccggaccctgtcagggcacacagccaag
atcaccagtctggcatggagcccacatcatgagggaaggctggtatccgcttcctatgat
ggtacagctcaggtgtgggatactctccaggaagagcctctatgcaatttccgaggacat
cgaggtcgactgctttgcgttgtgtggtccccgctggatccagattgcatctactcaggg
gcagatgatttctgtgtgtataaatggctcacttccatgcaggaacactcccgacctcct
caaggcaagaaaagtattgaattagagaaaaagcggctctctcaacctaaaccaaagccc
aaaaagaagaaaaagcccactttgagagtgcctgtaaggcaagaattatgtgatgggaat
gaagaagagagtgtaaaggagagcctgggccctattgagaacggcgtgtcagaccaggag
accgaggaggaagcccgcgagccagagccaccctgtggtgtcaccgcagcggtttctaaa
gaaccaattatctgcactccagcagccttaggttttgaaaagtcaaaaagcaccattaat
aacaaagtcactttactgaaaaaggaggtacctaaagagaagccagaagccttaatcaag
aagcgaaaagctcgttccatgcttccactgagtacaagtctggaccacagatccaaagag
gagcttcatcaggactgtttggtattagccaccaccaaacactccaaagcagggccaaac
gaggatgtgtctactgatcttgaggaaagatttcacctggggcttttcacagacagggct
accctgtacagaatgattgaggttgaaggaaaaagtcacttggaaaatggccaccccgag
ttatttcaccagctcatgctttggaaaggagatctaaaaggtgttctgcagactgcagca
gaaagaggggagctgacagacaatctcgtggctatggcaccagtcgccgggtaccatgtg
tgggtatgggctgtggaagcttttgccaaacaactgtgttttcaggaccagtatgtcaag
gctgcctctcacctgctttctatccacaaagtgtatgaagctgtggagctgctcaagtca
aaccatttctacagggaagctattgcagttgccaaggcccggctgcgcccagaggaccca
atcataaaagacctgtacctcagctggggagccatcctagaaaaagacggccactatgcc
ttagcagcaaaatgctatttaggggccacttcagcttatgatgcagccaaagttttggcc
aaaaagggggatgcggcatcacttaggacggcagcagagttggcctccatcgtgggagag
aatgagttgtcggcttccctggctctaagatgtgcccaagaactgcttctggcccggaac
tgggtgggagcccaggaggccctgcagctccacacaagtctaaagggtcagagattggtg
ttctgccttcttgagctactgtccaagcacctggaggaaaagcagctctctgagggcaaa
agctccttttcttcttacaatgcttggcccacagacagcgaagggtcctttgtggagagg
gtgactgcagtatggaagagcaccttcagcctcgactccccagagcagtaccaggcagca
tttcagcagctgcaaaatatcaagtacccatctgctacaagtaacactccctccaaacag
ctcctgctccacatttgccatgacctgaccttggcactgctaagccaggaagcgggctcc
tgggacgcagctgtggaaggattgcttcgggctgtgatccggagctacgactcaggaaac
ttcaccatcatgcaggaagtgcactcagcctttcttccgcagggctgtgaccatctaaga
gacaaactgggtgatcatcagtctcccaccataccagctttcaaaagtctgaaggccttt
tttatttacggacgtctatatgaattctggtggtctctctctgggccttgcccggagtcc
agtgtctggctaagagctactcacagaagtaaaacctctactggacagagccaagaggtt
gacagtgtcagccctgaagaaactgaccccaaagcttcccagccagagccaagcaggact
ccagaactagatgtgagacttacagaagaaggtgagcaaatgcagaacgcttgtaaggag
ctcttgtcagaaaagcatgctggtctccaaaatgcacagagaactgttgctgaagtccaa
gagaccttggcagaaatgatccgccaacaccagaagactcaactctgtaaatccacagca
aatggccctgataagaatgaacctgaacaggaaggagagtccctctctcatcctcagaac
cagtgtaaagaagaaaaaaatgaaccagtttctttgcctgaattaaccaaaagacttaca
gaggcaaatgagagaatagctaagcttcctgagagtattaagacctggcctttcccggac
gtgctggaatgctgcctcatcctgcttcacattgggtcccaatgtcctagctttgtgacc
cgggaaatgcagcaacaggctcaagagttccttcagaagtacggcaacacaaaagtttac
aaacgacattaccagaccctctacacatga

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