Bubalus bubalis (water buffalo): 102407485
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Entry
102407485 CDS
T05912
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bbub04121
]
102407485 (PDZRN3)
Enzymes [BR:
bbub01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102407485 (PDZRN3)
Ubiquitin system [BR:
bbub04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
102407485 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
Sina_ZnF
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
102407485
NCBI-ProteinID:
XP_044789728
LinkDB
All DBs
Position
21:28055225..28327843
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AA seq
1133 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGQVVKLQQLPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNAALQARLGAL
HKAFKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVYPSLKATEIKESGQTQGNLAKDKDRAEEWQ
DMVRKRPEKKRRVVIKFPLLLAKATVSTTNEHGLLQENDSLIDNQDGSSSEGIFVSKIVD
SGPAAKDGGLQIHDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPP
SESQMVDMGTQTDITFEHIMALSKMSSPTPPVLDPYLLPEEHPSAHEYYDPNDYIAGIHQ
EMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGD
RIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWLDDDRNDFLDDLHMDML
EEQHHQAMQFTASVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQEN
NGDDAPAASPPLAGQRKLTCSQDTLGSGDLPFSNESFISADCADADYLGIPVDECERFRE
LLELKCQVKSAGPYSLYYPGSTLDASKSDPESVDKELELLNEELRSIELECLSIVRAHKM
QQLKEQFREPWMLHNSGFRNYNTSVDVRRRELADITELPEKSDKDSSSAYNTGESCRSTP
LTLEMSPDNSLRRAAEGEGAAEAYGPSPKNLLSITEDSEGGSPNYSPSPKELDPSPAPEN
KERKPGEEGGGGSGSPTPGAKLGGSYLPPFPHSPYKHAHIPAHAQHYQSYMQLIQQKSAV
EYAQSQMSLVSMCKDLNSANQSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREE
RSGMTTDDDAVSELKMGRYWSKEERKQHVVKAKEQRRRREFMMQSRLDCLKEQQGADDRK
EMNILELSHKKMMKKRNKKIFDNWMTIQELLTHGAKSPDGTRVYNSFLSVTTV
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgacggcgacgtggacccggacctgaagtgcgctctg
tgccacaaggtcctggaggacccgctgaccacgccgtgcggccacgtcttctgcgccggc
tgtgtgctgccctgggtggtacaggagggcagctgcccggcgcgctgccgcggtcgcctc
tcggccaaggagctcaaccacgtcctgccgctcaagcgcctcatcctcaagctggacatc
aagtgcgcgcacgcggcgcgcggctgtggccaggtggtcaagctacaacagctgcccgag
cacctcgagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccaggtg
ctgctgaggcgagacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggccggtgggc
cgctgccaggagggctgcgggctgcccctgacgcacggcgagcagcgcgccggaggccac
tgctgtgcacgggccctacgggcgcacaacgccgcgctgcaggcccgcctgggcgcgctg
cacaaggcgttcaagaaggaggcgctgcgagccggcaagcgtgagaagtccctggtggcg
cagctggccgccgcacagctggagctgcagatgaccgccctgcgctaccagaagaagttc
accgagtacagcgcgcgccttgactcgcttagccgctgcgtggccgcgccgcccggcggc
aagggtgaagaaacaaaaagcctgactcttgtcctgcatcgggactctggctccttggga
ttcaacatcattggtggccggccgtgtgtgtacccatctttgaaggccactgagataaaa
gaaagtggacagacccagggaaacctggccaaggacaaagacagagctgaggagtggcag
gacatggtcagaaagaggccagagaagaagaggcgggttgtgattaaattccctttgctt
ttggccaaagccacagtttcaacaacaaacgagcatggtttattgcaagaaaatgacagc
ttaatagacaaccaagatggatcgtccagtgaaggaatctttgtatccaaaatagttgac
agcgggcccgcagccaaggacggaggtctgcaaattcacgacaggattattgaggtcaat
ggcaaagacttatccagagcaactcatgaccaggctgtggaagccttcaagacagccaag
gaacctatcgtggtccaggtgttgaggagaacaccgcggaccaaaatgttcactcctccg
tcagagtcacagatggtggacatgggaacacagacagacatcacctttgagcacatcatg
gcccttagcaagatgtcctcgcccaccccacctgtactggatccctatctcttgccagag
gagcatccctcagcccatgagtactatgatccaaatgactacatcgcaggcatccatcag
gagatggacagggaggagctggagctagaggaagtggatctctacagaatgaacagccag
gacaagctgggcctcacggtgtgctaccggacagatgatgaagatgacattggcatctat
ataagcgagattgaccctaacagcatcgcggccaaggatgggcgcatccgagaaggagac
cgcattatccagattaatgggatagaggtacagaaccgtgaagaggctgtagctctgcta
accagtgaagaaaacaagaacttctcattgctaattgccaggcccgaactccagctggac
gagggctggctggatgacgacaggaacgactttctggatgacctgcacatggacatgctg
gaggagcagcaccaccaggccatgcagttcacggccagcgtcctgcagcagaagaagcac
gaggaagacgggggaaccacagacacggccaccatcctgtccaaccagcacgagaaagac
agcggcgtgggtcggacggacgagagcacacgcaatgacgagagctcggagcaggagaac
aacggcgacgatgcccccgcggcctccccgccgctggctgggcagaggaagctcacttgc
agccaggacaccctgggcagtggcgacctgcccttcagcaacgagtccttcatctcggcc
gactgcgccgacgccgactacctgggcatccctgtggacgagtgcgagcgcttccgcgag
ctgctggagctcaagtgccaggtgaagagcgctggcccctatagcctctactaccctggc
agcaccctggacgccagcaagagcgaccccgagagcgtggacaaggagctagagctgctc
aacgaggagctgcgcagcatcgagctggagtgcctcagcatcgtgcgcgcgcacaagatg
cagcagctcaaggagcagttccgcgagccctggatgcttcacaacagcggcttccgcaac
tacaacaccagcgtggacgtgcgcaggcgcgagctcgccgacatcaccgagctgcccgag
aagtccgacaaagacagctcgagtgcctacaacaccggcgagagctgccgcagcacccca
ctcaccttggagatgtcccccgacaactccctgcggagggcggccgagggagaaggtgcc
gcagaagcttacgggccgtcccccaagaacctgctctccatcacggaagattccgagggg
ggctccccgaactacagcccttcccctaaagagctggatcccagcccggctccggagaac
aaggagaggaagcccggcgaagaaggtggtggcggcagcgggagccccacccccggcgcg
aagctgggaggctcgtacctgccgcccttcccgcactcgccctacaagcacgcccacatc
cccgcgcacgcacagcactaccagagctacatgcagctgatccagcagaagtcggccgtc
gagtacgcgcagagccagatgagcctggtgagcatgtgcaaggacctgaactcagccaac
cagtcagagccgaggatggagtggaaggtgaagatccgcagcgacggcacgcgctacatc
accaagcgcccagtgcgggatcgcctgttgcgggagcgcgcgctcaagatccgagaagag
cgcagcggcatgaccacggacgacgacgcggtgagcgagctgaagatggggcgctactgg
agcaaggaggagaggaagcagcacgtggtgaaggccaaggagcagaggcggcggcgcgag
ttcatgatgcagagccggctcgattgcctgaaggagcagcagggggccgacgacaggaag
gagatgaatatcctcgaactcagccacaaaaagatgatgaagaagaggaataaaaagata
tttgataactggatgacaatccaagaactcttaacccacggcgcaaaatcgccagacggc
actagagtatacaattcattcctctcggtgactactgtataa
DBGET
integrated database retrieval system
