Bubalus bubalis (water buffalo): 102407534
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Entry
102407534 CDS
T05912
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03013
Nucleocytoplasmic transport
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102407534 (UPF1)
03015 mRNA surveillance pathway
102407534 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102407534 (UPF1)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102407534 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102407534 (UPF1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102407534 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102407534 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102407534
NCBI-ProteinID:
XP_044804287
LinkDB
All DBs
Position
9:105968009..106001722
Genome browser
AA seq
1160 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQGCLPERGTDSEEHLWTSKRTTLLRLQDSQPLLLVGGPEGILQNGAV
DDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRG
NTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLC
RQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELW
KENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNI
TVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAA
MNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNS
QASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcagggctgccttccggagagg
ggaactgacagtgaagaacatttgtggactagcaagagaaccacgttgctacgtctgcag
gactctcagcctttgcttctggtcggtggccctgagggcatcctgcagaatggggctgtg
gacgacagcgtggccaagaccagccagttgttggccgagttgaactttgaagaagatgaa
gaagatacctattacacaaaggatctgcctgtacatgcctgcagttactgtggaatacac
gatcctgcttgcgtcgtttactgtaacaccagcaagaagtggttctgtaatggacgtgga
aatacttctggcagccacattgtaaatcaccttgtgagggcaaaatgcaaagaggtgact
ctgcacaaggatgggcccctaggggagacggttctggagtgttataactgcggctgccgc
aacgtcttcctcctcggcttcatccctgccaaggccgactcggttgtggtgctgctgtgc
aggcagccctgtgccagtcagagcagcctcaaggacatcaactgggacagctcccagtgg
cagcccctgatccaggaccggtgcttcctgtcctggctggtcaagatcccttctgagcag
gagcagctgcgggcgcggcagatcaccgcccagcagatcaacaagctggaggagctctgg
aaggagaacccttctgccaccttggaggacctggagaagcccggagtggacgaggagccg
cagcacgtcctcctgcgctacgaggacgcctaccagtaccagaacatattcgggcctctg
gtcaagctggaggctgactacgacaagaagctgaaagagtcgcagactcaagataacatc
acggtcaggtgggacctgggccttaacaagaagagaatcgcctacttcactttgcccaag
actgactctggtaatgaggatttagtcataatttggttaagagacatgcggctcatgcaa
ggggatgagatatgcctgcggtacaaaggggacctggcgcccctctggaaagggatcggc
cacgtcatcaaggtccctgacaattatggcgatgagattgctattgagcttcggagcagc
gtaggcgcccctgtggaggtgactcataacttccaggtggatttcgtgtggaagtcaacc
tcattcgacagaatgcagagcgcactgaaaacctttgccgtggacgagacctccgtgtcg
ggctacatctaccacaaactgctcggccacgaggtggaggatgtgatcatcaagtgccag
ctgcccaagcgcttcacggcacaggggctccccgacctcaaccactctcaggtttatgcc
gtgaagactgtgctgcagagaccactgagtctgatccagggcccaccgggcacaggaaag
accgtgacctcagccaccatcgtctaccacctggctcggcaaggcaacgggcctgtgctg
gtctgtgctccaagcaacatagccgtggatcagctgactgagaagatccaccagaccggg
ctgaaagtcgtgcggctctgcgccaagagccgcgaggccatagactccccggtgtctttc
ttggccctgcacaaccagatcaggaacatggacagcatgccagagctccaaaagctgcag
cagctgaaggatgagaccggggagctgtcgtcggcggacgagaagcgttatagagccctg
aagcgcactgccgagagggagctgctcatgaacgcagatgtcatctgctgcacgtgtgtg
ggcgcaggagacccgaggctcgccaagatgcagttccgctccattttaatcgacgaaagc
acgcaggccaccgagccagagtgcatggtccccgtggtccttggagccaagcagctgatc
ctcgtgggtgaccactgccagctgggccctgtggtgatgtgcaagaaggcggccaaggct
gggctgtcgcagtcgctctttgagcgcctggtggtgctgggcatccgccccatccgcctc
caggtccagtaccggatgcaccctgcgctcagcgccttcccgtccaacatcttctacgag
ggctctctccagaatggcgttaccgcagcggatcgtgtaaagaaggggtttgactttcag
tggccccaaccggataaaccaatgttcttctatgtgacccagggccaagaggagattgcc
agctcaggcacctcctacctgaacaggacggaggctgcaaacgtggagaagatcaccacg
aagttgttgaaggcgggcgccaagccggaccagatcggcatcatcacgccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctac
caggaggtggagattgccagcgtggatgcgttccaggggcgtgagaaggactttatcatc
ctctcctgtgtgcgggccaatgagcaccaaggcattggatttttgaatgaccccaggcga
ctcaacgtggccttgaccagagcacgatatggggtcattatcgtgggcaacccgaaggcc
ctgtccaagcagccgttatggaaccacctgctgaactactacaaggagcagaaggtgctg
gtggagggacccctgaacaacctgcgggagagcctcatgcagttcagcaagcccaggaag
ctggtcaacaccatcaacccgggagcccgcttcatgacgacagccatgtatgatgcccgg
gaggccatcatcccggggtcggtctatgaccggagcagccagggccggccctcgaacatg
tacttccagacccacgaccagatcggcatgatcagcgccggccccagccatgtggctgcc
atgaacatccccattcccttcaacctggtcatgccgcccatgccgccaccggggtatttt
ggacaagctaatgggccagccgcaggccgaggcaccccgaaaggcaagactggtcgtggg
gggcgccagaagaaccgctttggacttcctgggcccagtcagacgaatctccccaacagc
caggccagccaggatgtggcgtcccagcccttctcccagggcgccctgacccaaggctac
atctccatgagccagccctcccagatgagccagcccggcctctcccagcctgagctgtcc
caggacagctaccttggagatgagtttaagtcacagatcgacgtggcgctgtcgcaagac
tccacataccagggcgagcgggcgtaccagcacggtggagtgacggggctgtcccagtac
tag
DBGET
integrated database retrieval system
