Bubalus bubalis (water buffalo): 102407539
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Entry
102407539 CDS
T05912
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1 isoform X2
KO
K24318
scavenger receptor class F member 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102407539 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bbub04131
]
102407539 (SCARF1)
Membrane trafficking [BR:
bbub04131
]
Endocytosis
Phagocytosis
Scavenger receptors
102407539 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
102407539
NCBI-ProteinID:
XP_025136677
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All DBs
Position
3:40367288..40378463
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AA seq
931 aa
AA seq
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MDSHGSPARLSWDPGLTASSSCPLRIQTSPEASTQPSPLAFPFLSLLVSASQRLPTVSGR
CLMAARPSSLVSSGKAWGGSRKGVGRCGGQTDPSPPAALAAMGPGLLFPLLLLEALGAPG
SELDAGGRHVCKASSPSAELQCCPGWRQKDQECTIPICEGLDACREDEVCVKPGLCRCKP
GFFGAQCNSRCPGQYWGPDCREVCTCHPHGQCEPATGVCHCQPDRWGDRCEFPCACGPHG
RCNPETGACRCEPGWWSPTCRRPCQCNPAAARCDQATGSCLCEPGWWGRRCSFRCACHGS
PCAQESGRCACRPGWWGPECRQPCECVRGRCSAVSGQCSCPPGFHGVRCELPCSAGQYGL
RCRDSCGHCKQNKPCSADTGSCEACEPGWNGTQCHQPCPPGTFGENCSQQCPHCRLGEAC
QPDTGHCQRCEPGWRGPRCEDPCLTGTFGEGCGSTCPTCVQGACDAVTGECVCNAGYWGP
SCNTSCPSGFHGNNCSVPCECPEGNCDPVSGACQLGSHSQDTALIAGILVPLLLLLLATA
CCACCCWAARLDPKDRPVRDGTAMSRMKLQVWGALTSSLGSALPCGSLSSHKLPWVTVSH
HDPEIPFNHSFIEPPSAGWASDDSFSSDSESGEEDEGPAYCVPPQEGMVPAAPAESSEAS
LAGGPFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSRRGSGELSSPLRKPKR
LSRGTQPGPESQETENSTGPQVETDGAPPGTASPRDSAVGRRRLPLGGRTVAERVEAIEG
SVQESSGSVTTIYMLAGTPRGPEGPVRSVLRRFGSFQKGQAEPKVKSAIPKPPRRALSRN
KDSPRLDSGSANQSPSSAMKEELTGALESSGTGSEEGARSLGDSIKSSEGGQELAPEDGP
LVQDPQKVADKEGQEEPQYENVIPISGPPEP
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggattcccatggctcacccgctcgcctgtcctgggatccgggacttacagcctcatct
tcctgccccctccggattcagaccagcccagaagcctctactcagccctcaccattggcc
ttccctttcctttcactattggtgtctgcgtctcagcgcctgcccactgtctcagggagg
tgcctcatggcagcccgcccctctagcctggtttcctcaggaaaagcctggggaggaagc
aggaagggggttgggcgctgtgggggccagactgacccaagccctccggctgcactggcc
gccatggggccggggctgctgttccctctgttgctgctcgaggctctgggggccccgggg
tctgagctggatgccggggggcggcacgtctgcaaggccagcagcccctctgctgagctc
cagtgctgcccaggctggaggcagaaagatcaagaatgcaccatccccatctgtgagggg
ctggatgcctgccgggaagacgaggtatgtgtgaaaccaggcctctgtcggtgcaaacct
ggattcttcggagcccaatgcaactcccgctgcccgggccagtactggggccccgactgc
agggaggtctgcacctgccacccgcacggccagtgcgaaccggccaccggcgtgtgccac
tgccaacctgaccgctggggcgaccgctgcgagtttccgtgcgcctgcggtccccacggc
cgctgcaaccccgagaccggcgcgtgccgctgcgagcccggctggtggtcgcccacgtgc
cgccgcccgtgccagtgcaaccccgcggcggcgcggtgcgatcaggccaccggctcctgc
ctgtgcgagccaggctggtggggccgccgctgcagcttccgctgcgcctgccacggctcg
ccgtgcgcgcaggagtcgggccgctgcgcctgccggccgggctggtggggacccgagtgc
cggcagccgtgcgagtgcgtgcgcggccgctgcagcgccgtctccggccagtgctcctgc
ccgcccggcttccatggcgtgcgctgcgagctgccctgctccgccggccagtacgggctc
cggtgccgcgacagctgtggccactgcaagcagaataagccgtgctctgcagacacaggc
agctgcgaggcctgcgagccgggctggaacgggacccagtgccaccagccctgccctcct
ggcacctttggcgagaactgtagccagcagtgcccccactgccggcttggagaggcctgt
cagccagacaccggccactgtcagcgctgtgagcctggctggcgggggcccaggtgcgaa
gacccctgcctgactggcacctttggggagggttgcggctctacctgccccacctgtgtc
cagggggcctgtgatgctgtgacaggggagtgtgtctgcaacgctggctactgggggccc
agctgcaatacttcgtgtccatctggcttccatggaaacaactgctctgttccctgcgaa
tgtccagagggaaactgcgaccctgtctctggggcctgccagctgggatcacatagtcag
gacaccgccctcatcgcgggcatccttgttcctctgctgctgctgctcctggccaccgcc
tgctgtgcctgctgctgctgggccgcccggctggaccccaaggacaggccagtgagagat
ggaaccgccatgtccaggatgaagctgcaggtctggggggccctgacctccagcctgggc
tctgcgctgccctgtggttccctgagcagccacaagcttccctgggtgacagtctcgcac
cacgacccggagatccccttcaaccacagcttcatcgagccgccctccgctggctgggct
tcggatgactccttctcttcggattccgagtctggagaagaggacgagggtcctgcctat
tgcgtgccaccccaagaagggatggtccctgcggccccagcggaatcctcagaggccagc
ctggctggaggtcccttccctccccctgaggatgcctccacgccatttgccatcccgcgc
acttccagcctcgctagggccaagcggccatcagtctcctttgctgaaggcaccaagttc
gcaccacagagtcgccgaggctccggggagctctccagcccgctccgaaagcccaagagg
ctctcccgggggacccagccaggtcctgaaagccaggagactgagaattccacaggccca
caagtggaaacagatggggcccctcctggtactgccagccccagggattcagctgttggt
cgccgccggctcccacttggtggccggacagtggctgagcgtgtggaagccatcgagggc
agcgtccaggaaagctcaggctctgtcaccacgatctacatgttggcagggacaccccgg
ggacctgagggccccgtccggtctgtcctccgccgttttggtagcttccagaaaggccag
gcagaacccaaggtcaagagtgccatccccaagcctccacgtcgggccctgagtcgtaac
aaggacagccccaggctggactctggctctgccaatcagagccccagctcagccatgaag
gaggagctgactggggccttggagtcttcagggactgggtcagaggaaggggccaggagc
ctgggggacagcatcaagagctcagagggtggccaggagctggcccctgaggatggcccc
ctagtacaggatccccagaaggtggctgacaaggaagggcaggaggagccccagtatgaa
aatgtcatacccatctctgggccaccggaaccctga
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